Plasmid NZ_CP082176.1

Sequence

Nucleotide Information

Accession NZ_CP082176.1
Description Raoultella planticola strain SCLZS62 plasmid p8_SCLZS62, complete sequence
Source refseq
Topology circular
Length 42847 bp
GC Content 0.50 %
Created at NCBI Sept. 4, 2021



Assembly

Genome Data Information

Accession GCF_019856295.1
Assembly Coverage 140


Biosample

Curated Collection Information
Accession 20966583

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 28.88N;105.44E
Original Query Type coordinates
Coordinates (Lat/Lon) 28.88/105.44
Address 泸州高中, 锦竹巷, Jinianbiao, Dashanping Subdistrict, Luzhou, Jiangyang District, Luzhou, Sichuan, 646000, China

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP145927.1 See Comparison
NZ_CP145918.1 See Comparison
NZ_CP136606.1 See Comparison
NZ_CP139689.1 See Comparison
NZ_CP139684.1 See Comparison
NZ_MH328006.1 See Comparison
NZ_MF072963.1 See Comparison
NZ_KP726894.1 See Comparison
NZ_CP047392.1 See Comparison
NZ_MN904741.1 See Comparison
NZ_CP110915.1 See Comparison
NZ_CP126883.1 See Comparison
NZ_CP110358.1 See Comparison
NC_023331.1 See Comparison
NZ_CP145927.1 See Comparison
NZ_CP145918.1 See Comparison
NZ_MH328006.1 See Comparison
NZ_CP136606.1 See Comparison
NZ_CP139689.1 See Comparison
NZ_CP139684.1 See Comparison
NZ_CP110915.1 See Comparison
NZ_MF072963.1 See Comparison
NZ_KP726894.1 See Comparison
NZ_CP047392.1 See Comparison
NZ_MN904741.1 See Comparison
NZ_CP047392.1 See Comparison
NZ_CP110358.1 See Comparison
NC_023331.1 See Comparison
NZ_CP126883.1 See Comparison
NZ_CP145927.1 See Comparison
NZ_CP145918.1 See Comparison
NZ_CP136606.1 See Comparison
NZ_CP139689.1 See Comparison
NZ_CP139684.1 See Comparison
NZ_MF072963.1 See Comparison
NZ_KP726894.1 See Comparison
NZ_MN904741.1 See Comparison
NZ_MH328006.1 See Comparison
NC_023331.1 See Comparison
NZ_CP110358.1 See Comparison
NZ_CP110915.1 See Comparison
NZ_CP082176.1 See Comparison
NZ_CP126883.1 See Comparison
NZ_CP145927.1 See Comparison
NZ_CP145918.1 See Comparison
NZ_CP136606.1 See Comparison
NZ_CP139689.1 See Comparison
NZ_MH328006.1 See Comparison
NZ_CP139684.1 See Comparison
NZ_MF072963.1 See Comparison
NZ_KP726894.1 See Comparison
NZ_MN904741.1 See Comparison
NZ_CP047392.1 See Comparison
NZ_CP139689.1 See Comparison
NZ_CP110915.1 See Comparison
NZ_CP110358.1 See Comparison
NC_023331.1 See Comparison
NZ_CP126883.1 See Comparison
NZ_CP145927.1 See Comparison
NZ_CP145918.1 See Comparison
NZ_CP136606.1 See Comparison
NZ_CP139684.1 See Comparison
NZ_KP726894.1 See Comparison
NZ_MH328006.1 See Comparison
NZ_MF072963.1 See Comparison
NZ_CP110915.1 See Comparison
NZ_CP047392.1 See Comparison
NZ_MN904741.1 See Comparison
NZ_CP145927.1 See Comparison
NZ_CP126883.1 See Comparison
NZ_CP110358.1 See Comparison
NC_023331.1 See Comparison
NZ_CP145918.1 See Comparison
NZ_CP136606.1 See Comparison
NZ_CP047392.1 See Comparison
NZ_MH328006.1 See Comparison
NZ_MF072963.1 See Comparison
NZ_KP726894.1 See Comparison
NZ_CP139689.1 See Comparison
NZ_CP139684.1 See Comparison
NZ_MN904741.1 See Comparison
NZ_CP110358.1 See Comparison
NC_023331.1 See Comparison
NZ_CP110915.1 See Comparison
NZ_CP145927.1 See Comparison
NZ_CP126883.1 See Comparison
NZ_CP145918.1 See Comparison
NZ_MH328006.1 See Comparison
NZ_CP136606.1 See Comparison
NZ_MF072963.1 See Comparison
NZ_KP726894.1 See Comparison
NZ_CP139689.1 See Comparison
NZ_CP139684.1 See Comparison
NZ_CP047392.1 See Comparison
NZ_MN904741.1 See Comparison
NZ_CP110915.1 See Comparison
NZ_CP110358.1 See Comparison
NC_023331.1 See Comparison
NZ_CP126883.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaKPC-2copy
PGAGreplication initiator protein Acopy
PGAGhypothetical proteincopy
PGAGddp1copy
PGAGDUF2726 domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGTn3-like element Tn3 family transposasecopy
PGAGrecombinase family proteincopy
PGAGIS481-like element ISKpn27 family transposasecopy
PGAGcarbapenem-hydrolyzing class A beta-lactamase KPC-2copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 59 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000210__KF623109_00045IncU1191212472minus10010001037
relaxaseCP006657_00113MOBP3572736914minus1001000792
mate-pair-formationNC_022078_00100MPF_T2301724981minus10010001199
mate-pair-formationNC_022078_00103MPF_T2755728474minus1001000593
mate-pair-formationNC_022078_00104MPF_T2848229219minus1001002.5e-162504
mate-pair-formationNC_023331_00026MPF_T2934930422minus99.7211000605
mate-pair-formationNC_022078_00109MPF_T3146234218minus10010001881
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 7 of 7 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2