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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP076240.1
Sequence
Nucleotide Information
Accession
NZ_CP076240.1
Description
Escherichia coli O157:H7 strain 146N4 plasmid p3, complete sequence
Source
refseq
Topology
circular
Length
3306 bp
GC Content
0.43 %
Created at NCBI
Oct. 14, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (83334)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_020423185.1
Assembly Coverage
200
Biosample
Curated Collection Information
Accession
17295279
PLASMID INFORMATION
Genotype
eae, stx1, stx2c
BIOSAMPLE_pathotype
EHEC
GEOGRAPHICAL INFORMATION
Original Query
34.45S;58.91W
Original Query Type
coordinates
Coordinates (Lat/Lon)
-34.45/-58.91
Address
Acceso Norte Ramal Pilar, Villa Morra, Pilar, Partido del Pilar, Buenos Aires, 1629, Argentina
ECOSYSTEM
Original Query
Rectal swab of cattle in slaughterhouse
Classification
gastrointestinal_system,host_associated,rectal
Host-associated Taxon
Bos taurus (
9913
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
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Plasmids from same Biosample
NZ_CP076239.1
NZ_CP076238.1
Similar Plasmids
based on Mash distance
NZ_CP076247.1
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NZ_CP012804.1
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NZ_CP032807.1
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NZ_CP032800.1
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CP043013.1
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NZ_CP028613.1
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NC_002127.1
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AB011548.2
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CP051834.1
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NZ_CP111103.1
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NZ_EU675685.1
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NZ_CP039836.1
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NZ_CP038365.1
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NZ_CP034388.1
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NZ_CP045865.1
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NZ_CP062754.1
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NZ_CP062735.1
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NZ_CP062741.1
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NZ_CP111096.1
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NZ_CP038411.1
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NZ_CP038358.1
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NZ_CP038430.1
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NZ_CP038407.1
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NZ_CP038315.1
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NZ_CP062773.1
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NZ_CP062760.1
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NZ_CP062748.1
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NZ_CP062786.1
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NZ_CP062757.1
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NZ_CP062777.1
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NZ_CP062765.1
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NZ_CP062751.1
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NZ_CP062738.1
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NZ_CP062768.1
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CP051831.1
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CP051828.1
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CP051825.1
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NZ_CP028613.1
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NZ_CP066761.1
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NZ_CP066758.1
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NZ_CP064168.1
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CP043013.1
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NZ_CP120946.1
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NZ_CP076247.1
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NZ_CP012804.1
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NZ_CP032807.1
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NZ_CP032800.1
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NZ_CP111103.1
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NC_002127.1
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AB011548.2
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NZ_CP111096.1
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NZ_EU675685.1
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NZ_CP038411.1
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NZ_CP039836.1
See Comparison
NZ_CP038358.1
See Comparison
NZ_CP038430.1
See Comparison
NZ_CP038407.1
See Comparison
NZ_CP038315.1
See Comparison
NZ_CP062773.1
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NZ_CP038365.1
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NZ_CP034388.1
See Comparison
NZ_CP045865.1
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NZ_CP062760.1
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NZ_CP062748.1
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NZ_CP062786.1
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NZ_CP062757.1
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NZ_CP062777.1
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NZ_CP062765.1
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NZ_CP062751.1
See Comparison
NZ_CP062735.1
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NZ_CP062738.1
See Comparison
NZ_CP062768.1
See Comparison
NZ_CP062754.1
See Comparison
NZ_CP062741.1
See Comparison
NZ_CP066761.1
See Comparison
CP051834.1
See Comparison
CP051831.1
See Comparison
CP051828.1
See Comparison
CP051825.1
See Comparison
NZ_CP066758.1
See Comparison
CP043013.1
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NZ_CP064168.1
See Comparison
NZ_CP032807.1
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NZ_CP032800.1
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NZ_CP120946.1
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NZ_CP076247.1
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NZ_CP012804.1
See Comparison
NZ_CP028613.1
See Comparison
NZ_CP111103.1
See Comparison
NC_002127.1
See Comparison
AB011548.2
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NZ_CP111096.1
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NZ_EU675685.1
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NZ_CP039836.1
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NZ_CP062735.1
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NZ_CP038411.1
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NZ_CP038358.1
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NZ_CP038430.1
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NZ_CP038407.1
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NZ_CP038315.1
See Comparison
NZ_CP038365.1
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NZ_CP034388.1
See Comparison
NZ_CP045865.1
See Comparison
NZ_CP062773.1
See Comparison
NZ_CP062760.1
See Comparison
NZ_CP062748.1
See Comparison
NZ_CP062741.1
See Comparison
NZ_CP062786.1
See Comparison
NZ_CP062757.1
See Comparison
NZ_CP064168.1
See Comparison
NZ_CP062777.1
See Comparison
NZ_CP062765.1
See Comparison
NZ_CP062751.1
See Comparison
NZ_CP062738.1
See Comparison
NZ_CP062768.1
See Comparison
NZ_CP062754.1
See Comparison
NZ_CP066761.1
See Comparison
NZ_CP066758.1
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CP051834.1
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CP051831.1
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CP051828.1
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CP051825.1
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NZ_CP120946.1
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NC_002127.1
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NZ_CP076247.1
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NZ_CP032807.1
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NZ_CP032800.1
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NZ_CP028613.1
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NZ_CP012804.1
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CP043013.1
See Comparison
AB011548.2
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NZ_CP111096.1
See Comparison
NZ_EU675685.1
See Comparison
NZ_CP111103.1
See Comparison
NZ_CP039836.1
See Comparison
NZ_CP062773.1
See Comparison
NZ_CP038365.1
See Comparison
NZ_CP034388.1
See Comparison
NZ_CP045865.1
See Comparison
NZ_CP038411.1
See Comparison
NZ_CP038358.1
See Comparison
NZ_CP038430.1
See Comparison
NZ_CP038407.1
See Comparison
NZ_CP038315.1
See Comparison
NZ_CP062760.1
See Comparison
NZ_CP062748.1
See Comparison
NZ_CP062786.1
See Comparison
NZ_CP062757.1
See Comparison
NZ_CP062777.1
See Comparison
NZ_CP062765.1
See Comparison
NZ_CP062751.1
See Comparison
NZ_CP062738.1
See Comparison
NZ_CP062768.1
See Comparison
NZ_CP062754.1
See Comparison
NZ_CP062735.1
See Comparison
NZ_CP062741.1
See Comparison
CP051834.1
See Comparison
CP051831.1
See Comparison
CP051828.1
See Comparison
CP051825.1
See Comparison
NC_002127.1
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NZ_CP064168.1
See Comparison
NZ_CP120946.1
See Comparison
NZ_CP012804.1
See Comparison
NZ_CP032807.1
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NZ_CP032800.1
See Comparison
CP043013.1
See Comparison
NZ_CP066761.1
See Comparison
NZ_CP066758.1
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NZ_CP076247.1
See Comparison
NZ_CP028613.1
See Comparison
AB011548.2
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NZ_CP111103.1
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NZ_CP111096.1
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NZ_CP038411.1
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NZ_CP038407.1
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NZ_EU675685.1
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NZ_CP039836.1
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NZ_CP038358.1
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NZ_CP038430.1
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NZ_CP045865.1
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NZ_CP038365.1
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NZ_CP034388.1
See Comparison
NZ_CP038315.1
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NZ_CP062765.1
See Comparison
NZ_CP062751.1
See Comparison
NZ_CP062738.1
See Comparison
NZ_CP062773.1
See Comparison
NZ_CP062768.1
See Comparison
NZ_CP062760.1
See Comparison
NZ_CP062754.1
See Comparison
NZ_CP062748.1
See Comparison
NZ_CP062735.1
See Comparison
NZ_CP062786.1
See Comparison
NZ_CP062757.1
See Comparison
NZ_CP062777.1
See Comparison
NZ_CP062741.1
See Comparison
NZ_CP066761.1
See Comparison
CP051834.1
See Comparison
CP051831.1
See Comparison
CP051828.1
See Comparison
CP051825.1
See Comparison
NZ_CP066758.1
See Comparison
NZ_CP012804.1
See Comparison
NZ_CP076240.1
See Comparison
NZ_CP076247.1
See Comparison
NZ_CP064168.1
See Comparison
NZ_CP120946.1
See Comparison
CP043013.1
See Comparison
NZ_CP032807.1
See Comparison
NZ_CP032800.1
See Comparison
NZ_CP111096.1
See Comparison
NZ_CP028613.1
See Comparison
NC_002127.1
See Comparison
AB011548.2
See Comparison
NZ_CP038411.1
See Comparison
NZ_CP039836.1
See Comparison
NZ_CP111103.1
See Comparison
NZ_EU675685.1
See Comparison
NZ_CP038358.1
See Comparison
NZ_CP038315.1
See Comparison
NZ_CP038430.1
See Comparison
NZ_CP038407.1
See Comparison
NZ_CP062773.1
See Comparison
NZ_CP038365.1
See Comparison
NZ_CP045865.1
See Comparison
NZ_CP062765.1
See Comparison
NZ_CP062751.1
See Comparison
NZ_CP034388.1
See Comparison
NZ_CP062760.1
See Comparison
NZ_CP062738.1
See Comparison
NZ_CP062748.1
See Comparison
NZ_CP062768.1
See Comparison
NZ_CP062754.1
See Comparison
NZ_CP062786.1
See Comparison
NZ_CP062757.1
See Comparison
NZ_CP062777.1
See Comparison
NZ_CP064168.1
See Comparison
NZ_CP062735.1
See Comparison
NZ_CP062741.1
See Comparison
CP051834.1
See Comparison
CP051831.1
See Comparison
CP051828.1
See Comparison
CP051825.1
See Comparison
NZ_CP066761.1
See Comparison
NZ_CP066758.1
See Comparison
NZ_CP120946.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP076247.1
Sequence
Accession
:
NZ_CP076247.1
Description
: Escherichia coli O157:H7 strain Balcarce_24.2 plasmid p3, complete sequence
Source
: refseq
Created at NCBI
: Oct. 14, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
17295277
GEOGRAPHICAL INFORMATION
Original Query
: 37.84S;58.25W
Original Query Type
: coordinates
Address
: 546, 3 - Independencia, Independencia, San José de Balcarce, Partido de Balcarce, Buenos Aires, B7620ELN, Argentina
Coordinates
(Lat/Lon): -37.84/-58.25
ECOSYSTEM
Original Query
: Rectal swab of live bovine cattle
Classification
: gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062738.1
Sequence
Accession
:
NZ_CP062738.1
Description
: Escherichia coli O157:H7 strain Z1766 plasmid pZ1766-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327598
GEOGRAPHICAL INFORMATION
Original Query
: 55.8572N;3.1957W
Original Query Type
: coordinates
Address
: Bush Loan Road, Pentlands Science Park, Auchendinny, Midlothian, Scotland, EH26 0PZ, United Kingdom
Coordinates
(Lat/Lon): 55.86/-3.20
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062735.1
Sequence
Accession
:
NZ_CP062735.1
Description
: Escherichia coli O157:H7 strain Z1767 plasmid pZ1767-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327599
GEOGRAPHICAL INFORMATION
Original Query
: 55.8572N;3.1957W
Original Query Type
: coordinates
Address
: Bush Loan Road, Pentlands Science Park, Auchendinny, Midlothian, Scotland, EH26 0PZ, United Kingdom
Coordinates
(Lat/Lon): 55.86/-3.20
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062765.1
Sequence
Accession
:
NZ_CP062765.1
Description
: Escherichia coli O157:H7 strain Z885 plasmid pZ885-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327588
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062768.1
Sequence
Accession
:
NZ_CP062768.1
Description
: Escherichia coli O157:H7 strain Z866 plasmid pZ866-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327586
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062786.1
Sequence
Accession
:
NZ_CP062786.1
Description
: Escherichia coli O157:H7 strain Z869 plasmid pZ869-4, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327587
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062754.1
Sequence
Accession
:
NZ_CP062754.1
Description
: Escherichia coli O157:H7 strain Z910 plasmid pZ910-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327592
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062748.1
Sequence
Accession
:
NZ_CP062748.1
Description
: Escherichia coli O157:H7 strain Z1504 plasmid pZ1504-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327594
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062777.1
Sequence
Accession
:
NZ_CP062777.1
Description
: Escherichia coli O157:H7 strain Z563 plasmid pZ563-3, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327583
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062773.1
Sequence
Accession
:
NZ_CP062773.1
Description
: Escherichia coli O157:H7 strain Z570 plasmid pZ570-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327584
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062751.1
Sequence
Accession
:
NZ_CP062751.1
Description
: Escherichia coli O157:H7 strain Z1486 plasmid pZ1486-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327593
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062757.1
Sequence
Accession
:
NZ_CP062757.1
Description
: Escherichia coli O157:H7 strain Z903 plasmid pZ903-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327591
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP062760.1
Sequence
Accession
:
NZ_CP062760.1
Description
: Escherichia coli O157:H7 strain Z892 plasmid pZ892-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16327590
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Bovine Faeces
Classification
: fecal,host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP038411.1
Sequence
Accession
:
NZ_CP038411.1
Description
: Escherichia coli O157:H7 strain 86-24 plasmid p86-24-3, complete sequence
Source
: refseq
Created at NCBI
: May 28, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
11229497
GEOGRAPHICAL INFORMATION
Original Query
: USA,Washington
Original Query Type
: name
Address
: USA,Washington
Coordinates
(Lat/Lon): 47.40/-119.81
ECOSYSTEM
Original Query
: Homo sapiens
Classification
: host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP038315.1
Sequence
Accession
:
NZ_CP038315.1
Description
: Escherichia coli O157:H7 strain OK1 plasmid pOK1-2, complete sequence
Source
: refseq
Created at NCBI
: May 28, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
11229501
GEOGRAPHICAL INFORMATION
Original Query
: Japan,Okayama
Original Query Type
: name
Address
: Japan,Okayama
Coordinates
(Lat/Lon): 34.86/133.78
ECOSYSTEM
Original Query
: Homo sapiens
Classification
: host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP038407.1
Sequence
Accession
:
NZ_CP038407.1
Description
: Escherichia coli O157:H7 strain ATCC 35150 plasmid pATCC35150-2, complete sequence
Source
: refseq
Created at NCBI
: May 28, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
11229481
GEOGRAPHICAL INFORMATION
Original Query
: USA
Original Query Type
: name
Address
: USA
Coordinates
(Lat/Lon): 39.78/-100.45
ECOSYSTEM
Original Query
: Homo sapiens
Classification
: host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP038430.1
Sequence
Accession
:
NZ_CP038430.1
Description
: Escherichia coli O157:H7 strain 611 plasmid p611-2, complete sequence
Source
: refseq
Created at NCBI
: May 28, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
11229477
GEOGRAPHICAL INFORMATION
Original Query
: USA,Nebraska
Original Query Type
: name
Address
: USA,Nebraska
Coordinates
(Lat/Lon): 41.74/-99.59
ECOSYSTEM
Original Query
: bovine
Classification
: host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP038358.1
Sequence
Accession
:
NZ_CP038358.1
Description
: Escherichia coli O157:H7 strain F7508 plasmid pF7508-2, complete sequence
Source
: refseq
Created at NCBI
: May 28, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
5360163
GEOGRAPHICAL INFORMATION
Original Query
: USA
Original Query Type
: name
Address
: USA
Coordinates
(Lat/Lon): 39.78/-100.45
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP038365.1
Sequence
Accession
:
NZ_CP038365.1
Description
: Escherichia coli O157:H7 strain F7349 plasmid pF7349-2, complete sequence
Source
: refseq
Created at NCBI
: May 28, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
5360158
GEOGRAPHICAL INFORMATION
Original Query
: USA
Original Query Type
: name
Address
: USA
Coordinates
(Lat/Lon): 39.78/-100.45
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP032800.1
Sequence
Accession
:
NZ_CP032800.1
Description
: Escherichia coli strain ERL06-2497 plasmid pERL06-2497-3, complete sequence
Source
: refseq
Created at NCBI
: Oct. 13, 2019
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
10177965
GEOGRAPHICAL INFORMATION
Original Query
: New Zealand
Original Query Type
: name
Address
: New Zealand
Coordinates
(Lat/Lon): -41.50/172.83
ECOSYSTEM
Original Query
: bovine
Classification
: host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NZ_CP032807.1
Sequence
Accession
:
NZ_CP032807.1
Description
: Escherichia coli strain ERL05-0623 plasmid pERL05-0623-2, complete sequence
Source
: refseq
Created at NCBI
: Oct. 13, 2019
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
10177962
GEOGRAPHICAL INFORMATION
Original Query
: New Zealand
Original Query Type
: name
Address
: New Zealand
Coordinates
(Lat/Lon): -41.50/172.83
ECOSYSTEM
Original Query
: Bobby veal steak
Classification
: food,meat
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP012804.1
Sequence
Accession
:
NZ_CP012804.1
Description
: Escherichia coli O157:H7 strain WS4202 isolate laboratory strain plasmid pOSAK1-WS4202, complete sequence
Source
: refseq
Created at NCBI
: Jan. 27, 2016
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
4103124
GEOGRAPHICAL INFORMATION
Original Query
: France,Paris
Original Query Type
: name
Address
: France,Paris
Coordinates
(Lat/Lon): 48.86/2.35
ECOSYSTEM
Original Query
: culture collection specimen,derived from CIP 106327 (Collection de l'Institute Pasteur, Paris, France)
Classification
: cell_culture
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP062741.1
Sequence
Accession
:
NZ_CP062741.1
Description
: Escherichia coli O157:H7 strain Z1723 plasmid pZ1723-2, complete sequence
Source
: refseq
Created at NCBI
: March 6, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (83334)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
NZ_CP028613.1
Sequence
Accession
:
NZ_CP028613.1
Description
: Escherichia coli strain 142 plasmid pTA142-4
Source
: refseq
Created at NCBI
: May 8, 2019
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
8773049
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: cattle
Classification
: host_associated
Host-associated Taxon
:
Bos taurus (
9913
)
Visualization
PNG
JSON
NC_002127.1
Sequence
Accession
:
NC_002127.1
Description
: Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence
Source
: refseq
Created at NCBI
: July 23, 1998
Host Taxonomy
Assigned Host
:
Escherichia coli O157:H7 str. Sakai (386585)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Escherichia_coli_O157:H7_str._Sakai (386585)
NZ_EU675685.1
Sequence
Accession
:
NZ_EU675685.1
Description
: Escherichia coli strain 86-24 plasmid pSP70, complete sequence
Source
: refseq
Created at NCBI
: July 1, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
14225750
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
AB011548.2
Sequence
Accession
:
AB011548.2
Description
: Escherichia coli O157:H7 str. Sakai plasmid pOSAK1 DNA, complete sequence
Source
: insd
Created at NCBI
: July 23, 1998
Host Taxonomy
Assigned Host
:
Escherichia coli O157:H7 str. Sakai (386585)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Escherichia_coli_O157:H7_str._Sakai (386585)
Biosample
Accession
:
1911278
GEOGRAPHICAL INFORMATION
Original Query
: Japan,Sakai City,Osaka prefecture
Original Query Type
: name
Address
: Japan,Sakai City,Osaka prefecture
Coordinates
(Lat/Lon): 34.58/135.47
ECOSYSTEM
Original Query
: Homo sapiens,Human feces,Human intestinal microflora
Classification
: fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Hemorrhagic colitis, HUS
DOID/SYMP
:
Colitis
(
DOID:0060180
)
An inflammatory bowel disease that involves inflammation located_in colon.
Hemolyticuremic syndrome
(
DOID:12554
)
A kidney disease that is characterized by hemolytic anemia, thrombocytopenia, and renal failure caused by platelet thrombi in the microcirculation of the kidney and other organs.
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore