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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP038411.1
Sequence
Nucleotide Information
Accession
NZ_CP038411.1
Description
Escherichia coli O157:H7 strain 86-24 plasmid p86-24-3, complete sequence
Source
refseq
Topology
circular
Length
3306 bp
GC Content
0.43 %
Created at NCBI
May 28, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (83334)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_013168095.1
Assembly Coverage
380
Biosample
Curated Collection Information
Accession
11229497
PLASMID INFORMATION
BIOSAMPLE_pathotype
STEC
GEOGRAPHICAL INFORMATION
Original Query
USA,Washington
Original Query Type
name
Coordinates (Lat/Lon)
47.40/-119.81
Address
USA,Washington
ECOSYSTEM
Original Query
Homo sapiens
Classification
host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP038410.1
NZ_CP038409.1
Similar Plasmids
based on Mash distance
NZ_CP076240.1
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NZ_CP076247.1
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NZ_CP012804.1
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NZ_CP032807.1
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NZ_CP032800.1
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CP043013.1
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NZ_CP028613.1
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NC_002127.1
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AB011548.2
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NZ_CP111096.1
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NZ_CP038358.1
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NZ_CP039836.1
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NZ_CP111103.1
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NZ_EU675685.1
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NZ_CP038430.1
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NZ_CP038407.1
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NZ_CP038315.1
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NZ_CP034388.1
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NZ_CP038365.1
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NZ_CP045865.1
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NZ_CP062741.1
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NZ_CP062773.1
See Comparison
NZ_CP062760.1
See Comparison
NZ_CP062748.1
See Comparison
NZ_CP062786.1
See Comparison
NZ_CP062757.1
See Comparison
NZ_CP062777.1
See Comparison
NZ_CP062765.1
See Comparison
NZ_CP062751.1
See Comparison
NZ_CP062738.1
See Comparison
NZ_CP062768.1
See Comparison
NZ_CP062754.1
See Comparison
CP051834.1
See Comparison
NZ_CP062735.1
See Comparison
CP051831.1
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CP051828.1
See Comparison
CP051825.1
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NZ_CP064168.1
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NZ_CP066761.1
See Comparison
NZ_CP066758.1
See Comparison
CP043013.1
See Comparison
NZ_CP076240.1
See Comparison
NZ_CP076247.1
See Comparison
NZ_CP032807.1
See Comparison
NZ_CP032800.1
See Comparison
NZ_CP120946.1
See Comparison
NZ_CP012804.1
See Comparison
AB011548.2
See Comparison
NZ_CP028613.1
See Comparison
NZ_CP111103.1
See Comparison
NZ_CP111096.1
See Comparison
NC_002127.1
See Comparison
NZ_EU675685.1
See Comparison
NZ_CP038365.1
See Comparison
NZ_CP039836.1
See Comparison
NZ_CP038358.1
See Comparison
NZ_CP038407.1
See Comparison
NZ_CP038315.1
See Comparison
NZ_CP034388.1
See Comparison
NZ_CP038430.1
See Comparison
NZ_CP045865.1
See Comparison
NZ_CP062741.1
See Comparison
NZ_CP062773.1
See Comparison
NZ_CP062786.1
See Comparison
NZ_CP062757.1
See Comparison
NZ_CP062777.1
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NZ_CP062765.1
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NZ_CP062751.1
See Comparison
NZ_CP062738.1
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NZ_CP062768.1
See Comparison
NZ_CP062760.1
See Comparison
CP051834.1
See Comparison
NZ_CP062748.1
See Comparison
NZ_CP062754.1
See Comparison
NZ_CP062735.1
See Comparison
CP051831.1
See Comparison
CP051828.1
See Comparison
CP051825.1
See Comparison
NZ_CP120946.1
See Comparison
NZ_CP064168.1
See Comparison
NZ_CP066761.1
See Comparison
NZ_CP066758.1
See Comparison
NZ_CP028613.1
See Comparison
NZ_CP032807.1
See Comparison
NZ_CP032800.1
See Comparison
NZ_CP076240.1
See Comparison
NZ_CP076247.1
See Comparison
NZ_CP012804.1
See Comparison
CP043013.1
See Comparison
NZ_CP038358.1
See Comparison
NZ_CP111096.1
See Comparison
NZ_CP039836.1
See Comparison
NZ_CP038365.1
See Comparison
NC_002127.1
See Comparison
AB011548.2
See Comparison
NZ_CP111103.1
See Comparison
NZ_EU675685.1
See Comparison
NZ_CP038407.1
See Comparison
NZ_CP038315.1
See Comparison
NZ_CP038430.1
See Comparison
NZ_CP062773.1
See Comparison
NZ_CP062757.1
See Comparison
NZ_CP062777.1
See Comparison
NZ_CP062765.1
See Comparison
NZ_CP062751.1
See Comparison
NZ_CP062738.1
See Comparison
NZ_CP062768.1
See Comparison
NZ_CP062754.1
See Comparison
NZ_CP034388.1
See Comparison
NZ_CP045865.1
See Comparison
NZ_CP062741.1
See Comparison
NZ_CP062760.1
See Comparison
NZ_CP062748.1
See Comparison
NZ_CP062786.1
See Comparison
NZ_CP062735.1
See Comparison
NZ_CP066761.1
See Comparison
CP051834.1
See Comparison
CP051831.1
See Comparison
CP051828.1
See Comparison
CP051825.1
See Comparison
NZ_CP066758.1
See Comparison
NZ_CP028613.1
See Comparison
NZ_CP076240.1
See Comparison
NZ_CP076247.1
See Comparison
NZ_CP032807.1
See Comparison
NZ_CP032800.1
See Comparison
NZ_CP064168.1
See Comparison
NZ_CP120946.1
See Comparison
NZ_CP012804.1
See Comparison
CP043013.1
See Comparison
NZ_CP111096.1
See Comparison
NC_002127.1
See Comparison
AB011548.2
See Comparison
NZ_CP038365.1
See Comparison
NZ_CP111103.1
See Comparison
NZ_EU675685.1
See Comparison
NZ_CP038358.1
See Comparison
NZ_CP038430.1
See Comparison
NZ_CP038407.1
See Comparison
NZ_CP039836.1
See Comparison
NZ_CP038315.1
See Comparison
NZ_CP034388.1
See Comparison
NZ_CP062773.1
See Comparison
NZ_CP062777.1
See Comparison
NZ_CP062765.1
See Comparison
NZ_CP062751.1
See Comparison
NZ_CP062738.1
See Comparison
NZ_CP045865.1
See Comparison
NZ_CP062760.1
See Comparison
NZ_CP062768.1
See Comparison
NZ_CP062754.1
See Comparison
NZ_CP062748.1
See Comparison
NZ_CP062786.1
See Comparison
NZ_CP062757.1
See Comparison
CP051834.1
See Comparison
NZ_CP062735.1
See Comparison
NZ_CP062741.1
See Comparison
CP051831.1
See Comparison
CP051828.1
See Comparison
CP051825.1
See Comparison
NZ_CP064168.1
See Comparison
NZ_CP066761.1
See Comparison
NZ_CP066758.1
See Comparison
NZ_CP028613.1
See Comparison
NZ_CP120946.1
See Comparison
NZ_CP076240.1
See Comparison
NZ_CP076247.1
See Comparison
NZ_CP032807.1
See Comparison
NZ_CP032800.1
See Comparison
NZ_CP012804.1
See Comparison
CP043013.1
See Comparison
NZ_EU675685.1
See Comparison
NZ_CP111103.1
See Comparison
NC_002127.1
See Comparison
AB011548.2
See Comparison
NZ_CP111096.1
See Comparison
NZ_CP034388.1
See Comparison
NZ_CP038358.1
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NZ_CP038430.1
See Comparison
NZ_CP038407.1
See Comparison
NZ_CP039836.1
See Comparison
NZ_CP038315.1
See Comparison
NZ_CP038365.1
See Comparison
CP051834.1
See Comparison
NZ_CP062773.1
See Comparison
NZ_CP062760.1
See Comparison
NZ_CP062748.1
See Comparison
NZ_CP062786.1
See Comparison
NZ_CP062757.1
See Comparison
NZ_CP062777.1
See Comparison
NZ_CP045865.1
See Comparison
NZ_CP062765.1
See Comparison
NZ_CP062751.1
See Comparison
NZ_CP062738.1
See Comparison
NZ_CP062768.1
See Comparison
NZ_CP062754.1
See Comparison
NZ_CP062735.1
See Comparison
NZ_CP062741.1
See Comparison
CP051831.1
See Comparison
CP051828.1
See Comparison
CP051825.1
See Comparison
NZ_CP028613.1
See Comparison
NZ_CP064168.1
See Comparison
NZ_CP120946.1
See Comparison
CP043013.1
See Comparison
NZ_CP066761.1
See Comparison
NZ_CP066758.1
See Comparison
NZ_CP076240.1
See Comparison
NZ_CP076247.1
See Comparison
NZ_CP012804.1
See Comparison
NZ_CP032807.1
See Comparison
NZ_CP032800.1
See Comparison
NZ_CP111103.1
See Comparison
NC_002127.1
See Comparison
AB011548.2
See Comparison
NZ_CP111096.1
See Comparison
NZ_CP039836.1
See Comparison
NZ_EU675685.1
See Comparison
NZ_CP038411.1
See Comparison
NZ_CP038358.1
See Comparison
NZ_CP038430.1
See Comparison
NZ_CP038407.1
See Comparison
NZ_CP038315.1
See Comparison
NZ_CP062773.1
See Comparison
NZ_CP038365.1
See Comparison
NZ_CP062760.1
See Comparison
NZ_CP062748.1
See Comparison
NZ_CP062786.1
See Comparison
NZ_CP062757.1
See Comparison
NZ_CP062777.1
See Comparison
NZ_CP062765.1
See Comparison
NZ_CP062751.1
See Comparison
NZ_CP062738.1
See Comparison
NZ_CP034388.1
See Comparison
NZ_CP045865.1
See Comparison
CP051834.1
See Comparison
NZ_CP062735.1
See Comparison
NZ_CP062741.1
See Comparison
NZ_CP062768.1
See Comparison
NZ_CP062754.1
See Comparison
CP051831.1
See Comparison
CP051828.1
See Comparison
CP051825.1
See Comparison
NZ_CP064168.1
See Comparison
NZ_CP066761.1
See Comparison
NZ_CP066758.1
See Comparison
NZ_CP120946.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore