Plasmid NZ_CP038411.1

Sequence

Nucleotide Information

Accession NZ_CP038411.1
Description Escherichia coli O157:H7 strain 86-24 plasmid p86-24-3, complete sequence
Source refseq
Topology circular
Length 3306 bp
GC Content 0.43 %
Created at NCBI May 28, 2020



Assembly

Genome Data Information

Accession GCF_013168095.1
Assembly Coverage 380


Biosample

Curated Collection Information
Accession 11229497

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query USA,Washington
Original Query Type name
Coordinates (Lat/Lon) 47.40/-119.81
Address USA,Washington

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP076240.1 See Comparison
NZ_CP076247.1 See Comparison
NZ_CP012804.1 See Comparison
NZ_CP032807.1 See Comparison
NZ_CP032800.1 See Comparison
CP043013.1 See Comparison
NZ_CP028613.1 See Comparison
NC_002127.1 See Comparison
AB011548.2 See Comparison
NZ_CP111096.1 See Comparison
NZ_CP038358.1 See Comparison
NZ_CP039836.1 See Comparison
NZ_CP111103.1 See Comparison
NZ_EU675685.1 See Comparison
NZ_CP038430.1 See Comparison
NZ_CP038407.1 See Comparison
NZ_CP038315.1 See Comparison
NZ_CP034388.1 See Comparison
NZ_CP038365.1 See Comparison
NZ_CP045865.1 See Comparison
NZ_CP062741.1 See Comparison
NZ_CP062773.1 See Comparison
NZ_CP062760.1 See Comparison
NZ_CP062748.1 See Comparison
NZ_CP062786.1 See Comparison
NZ_CP062757.1 See Comparison
NZ_CP062777.1 See Comparison
NZ_CP062765.1 See Comparison
NZ_CP062751.1 See Comparison
NZ_CP062738.1 See Comparison
NZ_CP062768.1 See Comparison
NZ_CP062754.1 See Comparison
CP051834.1 See Comparison
NZ_CP062735.1 See Comparison
CP051831.1 See Comparison
CP051828.1 See Comparison
CP051825.1 See Comparison
NZ_CP064168.1 See Comparison
NZ_CP066761.1 See Comparison
NZ_CP066758.1 See Comparison
CP043013.1 See Comparison
NZ_CP076240.1 See Comparison
NZ_CP076247.1 See Comparison
NZ_CP032807.1 See Comparison
NZ_CP032800.1 See Comparison
NZ_CP120946.1 See Comparison
NZ_CP012804.1 See Comparison
AB011548.2 See Comparison
NZ_CP028613.1 See Comparison
NZ_CP111103.1 See Comparison
NZ_CP111096.1 See Comparison
NC_002127.1 See Comparison
NZ_EU675685.1 See Comparison
NZ_CP038365.1 See Comparison
NZ_CP039836.1 See Comparison
NZ_CP038358.1 See Comparison
NZ_CP038407.1 See Comparison
NZ_CP038315.1 See Comparison
NZ_CP034388.1 See Comparison
NZ_CP038430.1 See Comparison
NZ_CP045865.1 See Comparison
NZ_CP062741.1 See Comparison
NZ_CP062773.1 See Comparison
NZ_CP062786.1 See Comparison
NZ_CP062757.1 See Comparison
NZ_CP062777.1 See Comparison
NZ_CP062765.1 See Comparison
NZ_CP062751.1 See Comparison
NZ_CP062738.1 See Comparison
NZ_CP062768.1 See Comparison
NZ_CP062760.1 See Comparison
CP051834.1 See Comparison
NZ_CP062748.1 See Comparison
NZ_CP062754.1 See Comparison
NZ_CP062735.1 See Comparison
CP051831.1 See Comparison
CP051828.1 See Comparison
CP051825.1 See Comparison
NZ_CP120946.1 See Comparison
NZ_CP064168.1 See Comparison
NZ_CP066761.1 See Comparison
NZ_CP066758.1 See Comparison
NZ_CP028613.1 See Comparison
NZ_CP032807.1 See Comparison
NZ_CP032800.1 See Comparison
NZ_CP076240.1 See Comparison
NZ_CP076247.1 See Comparison
NZ_CP012804.1 See Comparison
CP043013.1 See Comparison
NZ_CP038358.1 See Comparison
NZ_CP111096.1 See Comparison
NZ_CP039836.1 See Comparison
NZ_CP038365.1 See Comparison
NC_002127.1 See Comparison
AB011548.2 See Comparison
NZ_CP111103.1 See Comparison
NZ_EU675685.1 See Comparison
NZ_CP038407.1 See Comparison
NZ_CP038315.1 See Comparison
NZ_CP038430.1 See Comparison
NZ_CP062773.1 See Comparison
NZ_CP062757.1 See Comparison
NZ_CP062777.1 See Comparison
NZ_CP062765.1 See Comparison
NZ_CP062751.1 See Comparison
NZ_CP062738.1 See Comparison
NZ_CP062768.1 See Comparison
NZ_CP062754.1 See Comparison
NZ_CP034388.1 See Comparison
NZ_CP045865.1 See Comparison
NZ_CP062741.1 See Comparison
NZ_CP062760.1 See Comparison
NZ_CP062748.1 See Comparison
NZ_CP062786.1 See Comparison
NZ_CP062735.1 See Comparison
NZ_CP066761.1 See Comparison
CP051834.1 See Comparison
CP051831.1 See Comparison
CP051828.1 See Comparison
CP051825.1 See Comparison
NZ_CP066758.1 See Comparison
NZ_CP028613.1 See Comparison
NZ_CP076240.1 See Comparison
NZ_CP076247.1 See Comparison
NZ_CP032807.1 See Comparison
NZ_CP032800.1 See Comparison
NZ_CP064168.1 See Comparison
NZ_CP120946.1 See Comparison
NZ_CP012804.1 See Comparison
CP043013.1 See Comparison
NZ_CP111096.1 See Comparison
NC_002127.1 See Comparison
AB011548.2 See Comparison
NZ_CP038365.1 See Comparison
NZ_CP111103.1 See Comparison
NZ_EU675685.1 See Comparison
NZ_CP038358.1 See Comparison
NZ_CP038430.1 See Comparison
NZ_CP038407.1 See Comparison
NZ_CP039836.1 See Comparison
NZ_CP038315.1 See Comparison
NZ_CP034388.1 See Comparison
NZ_CP062773.1 See Comparison
NZ_CP062777.1 See Comparison
NZ_CP062765.1 See Comparison
NZ_CP062751.1 See Comparison
NZ_CP062738.1 See Comparison
NZ_CP045865.1 See Comparison
NZ_CP062760.1 See Comparison
NZ_CP062768.1 See Comparison
NZ_CP062754.1 See Comparison
NZ_CP062748.1 See Comparison
NZ_CP062786.1 See Comparison
NZ_CP062757.1 See Comparison
CP051834.1 See Comparison
NZ_CP062735.1 See Comparison
NZ_CP062741.1 See Comparison
CP051831.1 See Comparison
CP051828.1 See Comparison
CP051825.1 See Comparison
NZ_CP064168.1 See Comparison
NZ_CP066761.1 See Comparison
NZ_CP066758.1 See Comparison
NZ_CP028613.1 See Comparison
NZ_CP120946.1 See Comparison
NZ_CP076240.1 See Comparison
NZ_CP076247.1 See Comparison
NZ_CP032807.1 See Comparison
NZ_CP032800.1 See Comparison
NZ_CP012804.1 See Comparison
CP043013.1 See Comparison
NZ_EU675685.1 See Comparison
NZ_CP111103.1 See Comparison
NC_002127.1 See Comparison
AB011548.2 See Comparison
NZ_CP111096.1 See Comparison
NZ_CP034388.1 See Comparison
NZ_CP038358.1 See Comparison
NZ_CP038430.1 See Comparison
NZ_CP038407.1 See Comparison
NZ_CP039836.1 See Comparison
NZ_CP038315.1 See Comparison
NZ_CP038365.1 See Comparison
CP051834.1 See Comparison
NZ_CP062773.1 See Comparison
NZ_CP062760.1 See Comparison
NZ_CP062748.1 See Comparison
NZ_CP062786.1 See Comparison
NZ_CP062757.1 See Comparison
NZ_CP062777.1 See Comparison
NZ_CP045865.1 See Comparison
NZ_CP062765.1 See Comparison
NZ_CP062751.1 See Comparison
NZ_CP062738.1 See Comparison
NZ_CP062768.1 See Comparison
NZ_CP062754.1 See Comparison
NZ_CP062735.1 See Comparison
NZ_CP062741.1 See Comparison
CP051831.1 See Comparison
CP051828.1 See Comparison
CP051825.1 See Comparison
NZ_CP028613.1 See Comparison
NZ_CP064168.1 See Comparison
NZ_CP120946.1 See Comparison
CP043013.1 See Comparison
NZ_CP066761.1 See Comparison
NZ_CP066758.1 See Comparison
NZ_CP076240.1 See Comparison
NZ_CP076247.1 See Comparison
NZ_CP012804.1 See Comparison
NZ_CP032807.1 See Comparison
NZ_CP032800.1 See Comparison
NZ_CP111103.1 See Comparison
NC_002127.1 See Comparison
AB011548.2 See Comparison
NZ_CP111096.1 See Comparison
NZ_CP039836.1 See Comparison
NZ_EU675685.1 See Comparison
NZ_CP038411.1 See Comparison
NZ_CP038358.1 See Comparison
NZ_CP038430.1 See Comparison
NZ_CP038407.1 See Comparison
NZ_CP038315.1 See Comparison
NZ_CP062773.1 See Comparison
NZ_CP038365.1 See Comparison
NZ_CP062760.1 See Comparison
NZ_CP062748.1 See Comparison
NZ_CP062786.1 See Comparison
NZ_CP062757.1 See Comparison
NZ_CP062777.1 See Comparison
NZ_CP062765.1 See Comparison
NZ_CP062751.1 See Comparison
NZ_CP062738.1 See Comparison
NZ_CP034388.1 See Comparison
NZ_CP045865.1 See Comparison
CP051834.1 See Comparison
NZ_CP062735.1 See Comparison
NZ_CP062741.1 See Comparison
NZ_CP062768.1 See Comparison
NZ_CP062754.1 See Comparison
CP051831.1 See Comparison
CP051828.1 See Comparison
CP051825.1 See Comparison
NZ_CP064168.1 See Comparison
NZ_CP066761.1 See Comparison
NZ_CP066758.1 See Comparison
NZ_CP120946.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore