Plasmid NZ_CP076238.1

Sequence

Nucleotide Information

Accession NZ_CP076238.1
Description Escherichia coli O157:H7 strain 146N4 plasmid p7, complete sequence
Source refseq
Topology circular
Length 7323 bp
GC Content 0.50 %
Created at NCBI Oct. 14, 2021



Assembly

Genome Data Information

Accession GCF_020423185.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 17295279

PLASMID INFORMATION
Genotype eae, stx1, stx2c
BIOSAMPLE_pathotype EHEC

GEOGRAPHICAL INFORMATION
Original Query 34.45S;58.91W
Original Query Type coordinates
Coordinates (Lat/Lon) -34.45/-58.91
Address Acceso Norte Ramal Pilar, Villa Morra, Pilar, Partido del Pilar, Buenos Aires, 1629, Argentina

ECOSYSTEM
Original Query Rectal swab of cattle in slaughterhouse
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore