Plasmid NZ_CP072715.1

Sequence

Nucleotide Information

Accession NZ_CP072715.1
Description Enterococcus faecium strain VB3378 plasmid pVB3378_p8, complete sequence
Source refseq
Topology circular
Length 6304 bp
GC Content 0.36 %
Created at NCBI April 12, 2021



Assembly

Genome Data Information

Accession GCF_017898025.1
Assembly Coverage 93.4


Biosample

Curated Collection Information
Accession 18533778

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9165N;79.1325E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Sepsis
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP096214.1 See Comparison
NZ_CP093951.1 See Comparison
NZ_AP024835.1 See Comparison
NZ_AP024841.1 See Comparison
NZ_CP035651.1 See Comparison
NZ_CP035657.1 See Comparison
NZ_CP035645.1 See Comparison
CP035663.1 See Comparison
NZ_LR135376.1 See Comparison
NZ_AP028418.1 See Comparison
AP031281.1 See Comparison
AP031249.1 See Comparison
NZ_CP066657.1 See Comparison
NZ_CP066650.1 See Comparison
NZ_CP066602.1 See Comparison
NZ_CP066596.1 See Comparison
NZ_CP066589.1 See Comparison
NZ_CP066664.1 See Comparison
NZ_CP066642.1 See Comparison
NZ_CP066671.1 See Comparison
NZ_CP066626.1 See Comparison
NZ_CP066618.1 See Comparison
NZ_CP066611.1 See Comparison
NZ_CP066477.1 See Comparison
NZ_CP066413.1 See Comparison
NZ_CP066431.1 See Comparison
NZ_CP066462.1 See Comparison
NZ_CP066387.1 See Comparison
NZ_CP066484.1 See Comparison
NZ_CP066419.1 See Comparison
NZ_CP065551.1 See Comparison
NZ_CP062273.1 See Comparison
NZ_CP096214.1 See Comparison
NZ_CP119155.1 See Comparison
NZ_AP026778.1 See Comparison
NZ_CP059801.1 See Comparison
NZ_AP024835.1 See Comparison
NZ_CP093951.1 See Comparison
NZ_AP024841.1 See Comparison
AP031281.1 See Comparison
NZ_AP028418.1 See Comparison
NZ_CP035651.1 See Comparison
NZ_CP035657.1 See Comparison
NZ_CP035645.1 See Comparison
CP035663.1 See Comparison
NZ_LR135376.1 See Comparison
AP031249.1 See Comparison
NZ_CP066657.1 See Comparison
NZ_CP066657.1 See Comparison
NZ_CP066650.1 See Comparison
NZ_CP066602.1 See Comparison
NZ_CP066596.1 See Comparison
NZ_CP066589.1 See Comparison
NZ_CP066664.1 See Comparison
NZ_CP066642.1 See Comparison
NZ_CP066671.1 See Comparison
NZ_CP066626.1 See Comparison
NZ_CP066618.1 See Comparison
NZ_CP066611.1 See Comparison
NZ_CP066477.1 See Comparison
NZ_CP066413.1 See Comparison
NZ_CP066431.1 See Comparison
NZ_CP066462.1 See Comparison
NZ_CP066387.1 See Comparison
NZ_CP066484.1 See Comparison
NZ_CP066419.1 See Comparison
NZ_CP062273.1 See Comparison
NZ_CP059801.1 See Comparison
NZ_CP119155.1 See Comparison
NZ_AP026778.1 See Comparison
NZ_AP028418.1 See Comparison
NZ_CP065551.1 See Comparison
NZ_CP096214.1 See Comparison
NZ_CP093951.1 See Comparison
NZ_AP024835.1 See Comparison
NZ_AP024841.1 See Comparison
NZ_CP035651.1 See Comparison
NZ_CP035657.1 See Comparison
NZ_CP035645.1 See Comparison
CP035663.1 See Comparison
NZ_LR135376.1 See Comparison
AP031281.1 See Comparison
AP031249.1 See Comparison
NZ_CP066650.1 See Comparison
NZ_CP066602.1 See Comparison
NZ_CP066596.1 See Comparison
NZ_CP066589.1 See Comparison
NZ_CP065551.1 See Comparison
NZ_CP066664.1 See Comparison
NZ_CP066642.1 See Comparison
NZ_CP066671.1 See Comparison
NZ_CP066626.1 See Comparison
NZ_CP066618.1 See Comparison
NZ_CP066611.1 See Comparison
NZ_CP066477.1 See Comparison
NZ_CP066413.1 See Comparison
NZ_CP066431.1 See Comparison
NZ_CP066462.1 See Comparison
NZ_CP066387.1 See Comparison
NZ_CP066484.1 See Comparison
NZ_CP066419.1 See Comparison
NZ_AP026778.1 See Comparison
NZ_CP062273.1 See Comparison
NZ_CP119155.1 See Comparison
NZ_CP059801.1 See Comparison
NZ_CP035651.1 See Comparison
NZ_CP096214.1 See Comparison
NZ_CP093951.1 See Comparison
NZ_AP024835.1 See Comparison
NZ_AP024841.1 See Comparison
NZ_CP035657.1 See Comparison
NZ_CP035645.1 See Comparison
CP035663.1 See Comparison
NZ_LR135376.1 See Comparison
NZ_CP066419.1 See Comparison
NZ_AP028418.1 See Comparison
AP031281.1 See Comparison
AP031249.1 See Comparison
NZ_CP066657.1 See Comparison
NZ_CP066650.1 See Comparison
NZ_CP066602.1 See Comparison
NZ_CP066596.1 See Comparison
NZ_CP066589.1 See Comparison
NZ_CP066664.1 See Comparison
NZ_CP066642.1 See Comparison
NZ_CP066671.1 See Comparison
NZ_CP066626.1 See Comparison
NZ_CP066618.1 See Comparison
NZ_CP066611.1 See Comparison
NZ_CP066477.1 See Comparison
NZ_CP066413.1 See Comparison
NZ_CP066431.1 See Comparison
NZ_CP066462.1 See Comparison
NZ_CP065551.1 See Comparison
NZ_CP066387.1 See Comparison
NZ_CP066484.1 See Comparison
NZ_CP059801.1 See Comparison
NZ_CP062273.1 See Comparison
NZ_CP096214.1 See Comparison
NZ_CP119155.1 See Comparison
NZ_AP026778.1 See Comparison
NZ_CP093951.1 See Comparison
NZ_AP024835.1 See Comparison
NZ_AP024841.1 See Comparison
NZ_LR135376.1 See Comparison
NZ_CP072715.1 See Comparison
NZ_CP035651.1 See Comparison
NZ_CP035657.1 See Comparison
NZ_CP035645.1 See Comparison
CP035663.1 See Comparison
NZ_CP096214.1 See Comparison
NZ_AP028418.1 See Comparison
AP031281.1 See Comparison
AP031249.1 See Comparison
NZ_CP066657.1 See Comparison
NZ_CP066650.1 See Comparison
NZ_CP066602.1 See Comparison
NZ_CP066596.1 See Comparison
NZ_CP066589.1 See Comparison
NZ_CP066664.1 See Comparison
NZ_CP066642.1 See Comparison
NZ_CP066671.1 See Comparison
NZ_CP066626.1 See Comparison
NZ_CP066618.1 See Comparison
NZ_CP066611.1 See Comparison
NZ_CP066477.1 See Comparison
NZ_CP066413.1 See Comparison
NZ_CP066431.1 See Comparison
NZ_CP066462.1 See Comparison
NZ_CP066387.1 See Comparison
NZ_CP066484.1 See Comparison
NZ_CP066419.1 See Comparison
NZ_CP065551.1 See Comparison
NZ_CP062273.1 See Comparison
NZ_CP059801.1 See Comparison
NZ_CP119155.1 See Comparison
NZ_AP026778.1 See Comparison
NZ_AP024835.1 See Comparison
NZ_CP093951.1 See Comparison
NZ_AP024841.1 See Comparison
NZ_CP035651.1 See Comparison
NZ_CP035657.1 See Comparison
NZ_CP035645.1 See Comparison
CP035663.1 See Comparison
NZ_LR135376.1 See Comparison
AP031281.1 See Comparison
AP031249.1 See Comparison
NZ_CP066431.1 See Comparison
NZ_CP066462.1 See Comparison
NZ_CP066387.1 See Comparison
NZ_CP066484.1 See Comparison
NZ_CP066419.1 See Comparison
NZ_CP119155.1 See Comparison
NZ_AP028418.1 See Comparison
NZ_CP066657.1 See Comparison
NZ_CP066650.1 See Comparison
NZ_CP066602.1 See Comparison
NZ_CP066596.1 See Comparison
NZ_CP066589.1 See Comparison
NZ_CP066664.1 See Comparison
NZ_CP066642.1 See Comparison
NZ_CP066671.1 See Comparison
NZ_CP066626.1 See Comparison
NZ_CP066618.1 See Comparison
NZ_CP066611.1 See Comparison
NZ_CP066477.1 See Comparison
NZ_CP066413.1 See Comparison
NZ_CP065551.1 See Comparison
NZ_CP062273.1 See Comparison
NZ_CP059801.1 See Comparison
NZ_AP026778.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP062273.1
    • Description: Enterococcus faecium strain VB3338 plasmid pVB3338_P8, complete sequence
    • Source: refseq
    • Created at NCBI: Oct. 11, 2020

  • Host Taxonomy
    Assigned Host: Enterococcus faecium (1352)
  • Biosample
    Accession: 16287686
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: sepsis
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore