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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP069670.1
Sequence
Nucleotide Information
Accession
NZ_CP069670.1
Description
Escherichia coli O89m:H9 strain MIN11 plasmid pMUB-MIN11-3, complete sequence
Source
refseq
Topology
circular
Length
5874 bp
GC Content
0.48 %
Created at NCBI
March 26, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (2810406)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_017570625.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
17831484
PLASMID INFORMATION
Genotype
ST-10
GEOGRAPHICAL INFORMATION
Original Query
53.12523570N;23.15905989E
Original Query Type
coordinates
Coordinates (Lat/Lon)
53.13/23.16
Address
Uniwersytecki Szpital Kliniczny, 24A, Marii Skłodowskiej-Curie, Osiedle Skłodowskiej, Piaski, Białystok, Podlaskie Voivodeship, 15-276, Poland
ECOSYSTEM
Original Query
Homo sapiens
Classification
host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP069676.1
NZ_CP069675.1
NZ_CP069674.1
NZ_CP069673.1
NZ_CP069672.1
NZ_CP069671.1
NZ_CP069669.1
NZ_CP069668.1
NZ_CP069667.1
Similar Plasmids
based on Mash distance
NZ_OY839923.1
See Comparison
CP098977.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY757104.1
See Comparison
NZ_OY754402.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OY754412.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
CP125047.1
See Comparison
CP124981.1
See Comparison
NZ_OY839923.1
See Comparison
CP098977.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754402.1
See Comparison
NZ_OY754412.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
NZ_OY757104.1
See Comparison
CP125047.1
See Comparison
CP124981.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY839923.1
See Comparison
CP098977.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_OY754447.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754402.1
See Comparison
NZ_OY754412.1
See Comparison
CP125047.1
See Comparison
CP124981.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_OY757104.1
See Comparison
NZ_OY839923.1
See Comparison
CP098977.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_OY757104.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754402.1
See Comparison
NZ_OY754412.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
CP125047.1
See Comparison
CP124981.1
See Comparison
NZ_OY839923.1
See Comparison
CP098977.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754402.1
See Comparison
NZ_OY754412.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
NZ_OY757104.1
See Comparison
CP098977.1
See Comparison
NZ_OY839923.1
See Comparison
CP125047.1
See Comparison
CP124981.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_CP069670.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_OY757104.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754402.1
See Comparison
NZ_OY754412.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
NZ_OY757123.1
See Comparison
CP098977.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_CP069663.1
See Comparison
CP125047.1
See Comparison
CP124981.1
See Comparison
NZ_OY839923.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_OY757104.1
See Comparison
CP125047.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754402.1
See Comparison
NZ_OY754412.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
CP124981.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
Detected typing markers by plasmidfinder
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2