Plasmid CP125047.1

Sequence

Nucleotide Information

Accession	CP125047.1
Description	Escherichia coli strain KFS-C10 plasmid pKFS-C10_3, complete sequence
Source	insd
Topology	circular
Length	5874 bp
GC Content	0.48 %
Created at NCBI	May 16, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCA_030019855.1
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	34598743

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	0.19N;32.35E
Original Query Type	coordinates
Coordinates (Lat/Lon)	0.19/32.35
Address	Senene Buzingu, Mpigi, Central Region, Uganda

ECOSYSTEM

Original Query	Fecal sludge
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP069663.1	See Comparison
NZ_CP069670.1	See Comparison
NZ_OY757123.1	See Comparison
NZ_OY757104.1	See Comparison
NZ_OY754381.1	See Comparison
NZ_OY754460.1	See Comparison
NZ_OY754402.1	See Comparison
NZ_OY754423.1	See Comparison
NZ_OY754447.1	See Comparison
CP124981.1	See Comparison
CP098994.1	See Comparison
NZ_OY839923.1	See Comparison
CP099018.1	See Comparison
CP099044.1	See Comparison
CP099054.1	See Comparison
NZ_OY757123.1	See Comparison
CP098977.1	See Comparison
NZ_OX359177.1	See Comparison
NZ_OX359184.1	See Comparison
NZ_CP069663.1	See Comparison
NZ_CP069670.1	See Comparison
NZ_OY757104.1	See Comparison
NZ_OY754381.1	See Comparison
NZ_OY754460.1	See Comparison
NZ_OY754402.1	See Comparison
NZ_OY754423.1	See Comparison
NZ_OY754447.1	See Comparison
NZ_CP069663.1	See Comparison
CP124981.1	See Comparison
NZ_OY839923.1	See Comparison
CP098977.1	See Comparison
CP098994.1	See Comparison
CP099018.1	See Comparison
CP099044.1	See Comparison
CP099054.1	See Comparison
NZ_OX359177.1	See Comparison
NZ_OX359184.1	See Comparison
NZ_CP069670.1	See Comparison
NZ_OY754381.1	See Comparison
NZ_OY754460.1	See Comparison
NZ_OY754402.1	See Comparison
NZ_OY754423.1	See Comparison
NZ_OY754447.1	See Comparison
CP098977.1	See Comparison
NZ_OY757123.1	See Comparison
NZ_OY757104.1	See Comparison
CP124981.1	See Comparison
NZ_OY839923.1	See Comparison
NZ_OX359177.1	See Comparison
NZ_OX359184.1	See Comparison
CP098994.1	See Comparison
CP099018.1	See Comparison
CP099044.1	See Comparison
CP099054.1	See Comparison
NZ_OY757123.1	See Comparison
NZ_CP069663.1	See Comparison
NZ_CP069670.1	See Comparison
NZ_OY757104.1	See Comparison
NZ_OY754460.1	See Comparison
NZ_OY754402.1	See Comparison
NZ_OY754423.1	See Comparison
NZ_OY754447.1	See Comparison
CP124981.1	See Comparison
NZ_OY754381.1	See Comparison
NZ_OY757123.1	See Comparison
NZ_OY839923.1	See Comparison
CP098977.1	See Comparison
CP098994.1	See Comparison
CP099018.1	See Comparison
CP099044.1	See Comparison
CP099054.1	See Comparison
NZ_CP069663.1	See Comparison
NZ_CP069670.1	See Comparison
NZ_OX359177.1	See Comparison
NZ_OX359184.1	See Comparison
NZ_OY757104.1	See Comparison
NZ_OY754381.1	See Comparison
NZ_OY754460.1	See Comparison
NZ_OY754402.1	See Comparison
NZ_OY754423.1	See Comparison
NZ_OY754447.1	See Comparison
CP124981.1	See Comparison
NZ_OY757123.1	See Comparison
NZ_OY839923.1	See Comparison
NZ_OX359177.1	See Comparison
NZ_OX359184.1	See Comparison
NZ_CP069670.1	See Comparison
CP098977.1	See Comparison
CP098994.1	See Comparison
CP099018.1	See Comparison
CP099044.1	See Comparison
CP099054.1	See Comparison
NZ_CP069663.1	See Comparison
NZ_OY757104.1	See Comparison
NZ_OY754381.1	See Comparison
NZ_OY754460.1	See Comparison
NZ_OY754402.1	See Comparison
NZ_OY754423.1	See Comparison
NZ_OY754447.1	See Comparison
NZ_OY839923.1	See Comparison
CP125047.1	See Comparison
CP124981.1	See Comparison
NZ_OX359177.1	See Comparison
CP098977.1	See Comparison
CP098994.1	See Comparison
CP099018.1	See Comparison
CP099044.1	See Comparison
CP099054.1	See Comparison
NZ_OX359184.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore