Plasmid CP098977.1

Sequence

Nucleotide Information

Accession CP098977.1
Description Escherichia coli strain RHB46-C17 plasmid unnamed2, complete sequence
Source insd
Topology circular
Length 5874 bp
GC Content 0.48 %
Created at NCBI April 13, 2023



Assembly

Genome Data Information

Accession GCA_029721235.1
Assembly Coverage 125


Biosample

Curated Collection Information
Accession 15488713

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled faeces sample collected from floor of poultry farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP125047.1 See Comparison
CP124981.1 See Comparison
CP098994.1 See Comparison
CP099018.1 See Comparison
CP099044.1 See Comparison
CP099054.1 See Comparison
CP125047.1 See Comparison
NZ_OX359177.1 See Comparison
NZ_OX359184.1 See Comparison
NZ_CP069663.1 See Comparison
NZ_CP069670.1 See Comparison
NZ_OY757123.1 See Comparison
NZ_OY757104.1 See Comparison
CP124981.1 See Comparison
NZ_OY754381.1 See Comparison
NZ_OY754460.1 See Comparison
NZ_OY754423.1 See Comparison
NZ_OY754447.1 See Comparison
CP098977.1 See Comparison
CP098994.1 See Comparison
CP099018.1 See Comparison
CP099044.1 See Comparison
CP099054.1 See Comparison
NZ_OX359177.1 See Comparison
NZ_OX359184.1 See Comparison
NZ_OY757123.1 See Comparison
NZ_CP069663.1 See Comparison
NZ_CP069670.1 See Comparison
NZ_OY757104.1 See Comparison
NZ_CP069670.1 See Comparison
NZ_OY754423.1 See Comparison
NZ_OY754447.1 See Comparison
CP098994.1 See Comparison
CP099018.1 See Comparison
CP099044.1 See Comparison
CP099054.1 See Comparison
NZ_CP069663.1 See Comparison
NZ_OY754381.1 See Comparison
NZ_OY754460.1 See Comparison
CP125047.1 See Comparison
CP124981.1 See Comparison
NZ_OX359177.1 See Comparison
NZ_OX359184.1 See Comparison
NZ_OY757123.1 See Comparison
NZ_OY757104.1 See Comparison
NZ_CP069663.1 See Comparison
CP125047.1 See Comparison
CP124981.1 See Comparison
CP098994.1 See Comparison
CP099018.1 See Comparison
CP099044.1 See Comparison
CP099054.1 See Comparison
NZ_CP069670.1 See Comparison
NZ_OY754381.1 See Comparison
NZ_OY754460.1 See Comparison
NZ_OY754423.1 See Comparison
NZ_OY754447.1 See Comparison
NZ_OX359177.1 See Comparison
NZ_OX359184.1 See Comparison
CP098994.1 See Comparison
NZ_OY754381.1 See Comparison
NZ_OY754460.1 See Comparison
NZ_OY754423.1 See Comparison
NZ_OY754447.1 See Comparison
CP125047.1 See Comparison
CP124981.1 See Comparison
NZ_OY757123.1 See Comparison
NZ_OY757104.1 See Comparison
CP099018.1 See Comparison
CP099044.1 See Comparison
CP099054.1 See Comparison
NZ_CP069663.1 See Comparison
NZ_OX359177.1 See Comparison
NZ_OX359184.1 See Comparison
NZ_CP069670.1 See Comparison
NZ_OY754381.1 See Comparison
NZ_OY757123.1 See Comparison
NZ_OY757104.1 See Comparison
NZ_OY754460.1 See Comparison
NZ_OY754423.1 See Comparison
NZ_OY754447.1 See Comparison
CP125047.1 See Comparison
CP124981.1 See Comparison
NZ_OY754381.1 See Comparison
CP098994.1 See Comparison
CP099018.1 See Comparison
CP099044.1 See Comparison
CP099054.1 See Comparison
NZ_OX359177.1 See Comparison
NZ_OX359184.1 See Comparison
NZ_CP069663.1 See Comparison
NZ_OY757123.1 See Comparison
NZ_OY757104.1 See Comparison
NZ_OY754423.1 See Comparison
NZ_CP069670.1 See Comparison
NZ_OY754460.1 See Comparison
NZ_OY754447.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore