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v. 2024_05_31_v2
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Typing
Plasmid CP098977.1
Sequence
Nucleotide Information
Accession
CP098977.1
Description
Escherichia coli strain RHB46-C17 plasmid unnamed2, complete sequence
Source
insd
Topology
circular
Length
5874 bp
GC Content
0.48 %
Created at NCBI
April 13, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCA_029721235.1
Assembly Coverage
125
Biosample
Curated Collection Information
Accession
15488713
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
United Kingdom
Original Query Type
name
Coordinates (Lat/Lon)
54.70/-3.28
Address
United Kingdom
ECOSYSTEM
Original Query
culture,Pooled faeces sample collected from floor of poultry farm
Classification
cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Gallus gallus (
9031
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
CP098978.1
CP098976.1
Similar Plasmids
based on Mash distance
CP125047.1
See Comparison
CP124981.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
CP125047.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_CP069670.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_OY757104.1
See Comparison
CP124981.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
CP098977.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_CP069670.1
See Comparison
NZ_OY757104.1
See Comparison
NZ_CP069670.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY754460.1
See Comparison
CP125047.1
See Comparison
CP124981.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_OY757104.1
See Comparison
NZ_CP069663.1
See Comparison
CP125047.1
See Comparison
CP124981.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_CP069670.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
CP098994.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
CP125047.1
See Comparison
CP124981.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_OY757104.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_CP069670.1
See Comparison
NZ_OY754381.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_OY757104.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_OY754447.1
See Comparison
CP125047.1
See Comparison
CP124981.1
See Comparison
NZ_OY754381.1
See Comparison
CP098994.1
See Comparison
CP099018.1
See Comparison
CP099044.1
See Comparison
CP099054.1
See Comparison
NZ_OX359177.1
See Comparison
NZ_OX359184.1
See Comparison
NZ_CP069663.1
See Comparison
NZ_OY757123.1
See Comparison
NZ_OY757104.1
See Comparison
NZ_OY754423.1
See Comparison
NZ_CP069670.1
See Comparison
NZ_OY754460.1
See Comparison
NZ_OY754447.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore