Plasmid NZ_CP066414.1

Sequence

Nucleotide Information

Accession NZ_CP066414.1
Description Enterococcus faecium strain Dallas 53_2 plasmid p53_2_1.9kb, complete sequence
Source refseq
Topology circular
Length 1980 bp
GC Content 0.39 %
Created at NCBI Dec. 29, 2020



Assembly

Genome Data Information

Accession GCF_016406545.1
Assembly Coverage 147


Biosample

Curated Collection Information
Accession 17038077

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Dallas
Original Query Type name
Coordinates (Lat/Lon) 32.78/-96.80
Address USA,Dallas

ECOSYSTEM
Original Query Homo sapiens,cell culture,rectal swab
Classification cell_culture,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP066646.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066420.1 See Comparison
NZ_CP065935.1 See Comparison
NZ_CP065553.1 See Comparison
CP064280.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP083919.1 See Comparison
NZ_CP064431.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066420.1 See Comparison
NZ_CP065935.1 See Comparison
NZ_CP066646.1 See Comparison
NZ_CP065553.1 See Comparison
NZ_CP066646.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066420.1 See Comparison
CP064280.1 See Comparison
NZ_CP083919.1 See Comparison
NZ_CP064431.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP083919.1 See Comparison
NZ_CP064431.1 See Comparison
NZ_CP065935.1 See Comparison
NZ_CP065553.1 See Comparison
CP064280.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066420.1 See Comparison
NZ_CP065935.1 See Comparison
NZ_CP066646.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP065553.1 See Comparison
CP064280.1 See Comparison
NZ_CP083919.1 See Comparison
NZ_CP065935.1 See Comparison
NZ_CP064431.1 See Comparison
NZ_CP065553.1 See Comparison
NZ_CP083919.1 See Comparison
NZ_CP066646.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP066414.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066420.1 See Comparison
NZ_CP065935.1 See Comparison
CP064280.1 See Comparison
NZ_CP064431.1 See Comparison
NZ_CP065553.1 See Comparison
NZ_CP066646.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066420.1 See Comparison
CP064280.1 See Comparison
NZ_CP083919.1 See Comparison
NZ_CP064431.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore