Plasmid NZ_CP065935.1

Sequence

Nucleotide Information

Accession NZ_CP065935.1
Description Enterococcus faecium strain Dallas 5 plasmid p5_1.9kb, complete sequence
Source refseq
Topology circular
Length 1981 bp
GC Content 0.39 %
Created at NCBI Dec. 21, 2020



Assembly

Genome Data Information

Accession GCF_016126675.1
Assembly Coverage 48


Biosample

Curated Collection Information

Accession 17038066

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Dallas
Original Query Type name
Coordinates (Lat/Lon) 32.78/-96.80
Address USA,Dallas

ECOSYSTEM
Original Query Homo sapiens,cell culture,rectal swab
Classification cell_culture,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization




Similar Plasmids

based on Mash distance

NZ_CP066646.1 See Comparison
NZ_CP065553.1 See Comparison
NZ_CP064431.1 See Comparison
NZ_CP066646.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP066414.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066420.1 See Comparison
CP064280.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP065553.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP066414.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066420.1 See Comparison
CP064280.1 See Comparison
NZ_CP064431.1 See Comparison
NZ_CP066646.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP065553.1 See Comparison
NZ_CP066414.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066420.1 See Comparison
CP064280.1 See Comparison
NZ_CP066420.1 See Comparison
NZ_CP064431.1 See Comparison
NZ_CP065935.1 See Comparison
NZ_CP066646.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP066414.1 See Comparison
NZ_CP065553.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
CP064280.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP064431.1 See Comparison
NZ_CP066414.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066646.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP066420.1 See Comparison
NZ_CP065553.1 See Comparison
CP064280.1 See Comparison
NZ_CP066450.1 See Comparison
NZ_CP064431.1 See Comparison
NZ_CP066456.1 See Comparison
NZ_CP066442.1 See Comparison
NZ_CP066433.1 See Comparison
NZ_CP066485.1 See Comparison
NZ_CP066472.1 See Comparison
NZ_CP066420.1 See Comparison
NZ_CP065553.1 See Comparison
NZ_CP066646.1 See Comparison
NZ_CP066582.1 See Comparison
NZ_CP066584.1 See Comparison
NZ_CP066575.1 See Comparison
NZ_CP066644.1 See Comparison
NZ_CP066628.1 See Comparison
NZ_CP066621.1 See Comparison
NZ_CP066607.1 See Comparison
NZ_CP066414.1 See Comparison
NZ_CP064431.1 See Comparison
CP064280.1 See Comparison


Plasmid Visualization


SourceElement Name Display Sequence Favorite
PGAGreplication initiation factor domain-containing proteincopy
MOB-typerrep_cluster_935copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 2 of 2 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon002420__CP003354_00001rep_cluster_93510131981minus91.8569901352
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 1 of 1 entry