Plasmid NZ_CP065935.1
Sequence
Nucleotide Information
Accession | NZ_CP065935.1 |
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Description | Enterococcus faecium strain Dallas 5 plasmid p5_1.9kb, complete sequence |
Source | refseq |
Topology | circular |
Length | 1981 bp |
GC Content | 0.39 % |
Created at NCBI | Dec. 21, 2020 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Enterococcus faecium (1352) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Bacillota (1239) |
Class | Bacilli (91061) |
Order | Lactobacillales (186826) |
Family | Enterococcaceae (81852) |
Genus | Enterococcus (1350) |
Species | Enterococcus_faecium (1352) |
Strain |
Biosample
Curated Collection Information
Accession | 17038066 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | USA,Dallas |
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Original Query Type | name |
Coordinates (Lat/Lon) | 32.78/-96.80 |
Address | USA,Dallas |
ECOSYSTEM
Original Query | Homo sapiens,cell culture,rectal swab |
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Classification | cell_culture,gastrointestinal_system,host_associated,rectal |
Host-associated Taxon |
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DISEASE
Original Query | None |
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DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
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Purples
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100
Hex
R
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B
Source | Element Name | Display | Sequence | Favorite |
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PGAG | replication initiation factor domain-containing protein | copy | ||
MOB-typer | rep_cluster_935 | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 2 of 2 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | 002420__CP003354_00001 | rep_cluster_935 | 1013 | 1981 | minus | 91.856 | 99 | 0 | 1352 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry