Plasmid NZ_CP065103.1

Sequence

Nucleotide Information

Accession NZ_CP065103.1
Description Salmonella enterica subsp. enterica strain SENT0058 plasmid pS58-TEM-47k, complete sequence
Source refseq
Topology circular
Length 47397 bp
GC Content 0.47 %
Created at NCBI Sept. 3, 2023



Assembly

Genome Data Information

Accession GCF_031039735.1
Assembly Coverage 240


Biosample

Curated Collection Information
Accession 16807077

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Taiwan
Original Query Type name
Coordinates (Lat/Lon) 23.60/120.84
Address Taiwan

ECOSYSTEM
Original Query Homo sapiens,cell culture,stool
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP058827.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
CP090279.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP138395.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP138395.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
CP090279.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
CP090279.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP138395.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
NZ_CP138395.1 See Comparison
CP090279.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
CP090279.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP138395.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP138395.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
CP090279.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP065103.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
NZ_CP081814.1 See Comparison
CP090279.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP138395.1 See Comparison
NZ_CP123250.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusaph(3')-Iacopy
amrfinderplusfloRcopy
amrfinderplusdfrA14copy
amrfinderplusblaTEM-176copy
amrfinderplusqnrS1copy
amrfinderplustet(A)copy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGtype II toxin-antitoxin system RelE/ParE family toxincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 63 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000215__KC853434_00019IncX134203866plus98.4341000787
relaxaseNC_019047_00022MOBP4402745181minus1001000726
mate-pair-formationNC_019047_00035MPF_T3125633052minus1009801116
mate-pair-formationNC_019047_00032MPF_T3532636252minus1001000631
mate-pair-formationNC_019047_00031MPF_T3626136932minus100935.5799999999999995e-136428
mate-pair-formationNC_019047_00030MPF_T3717338225minus1001000585
mate-pair-formationNC_023277_00163MPF_T3926141405minus82.7979901241
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 7 of 7 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2