Plasmid NZ_CP138395.1

Sequence

Nucleotide Information

Accession NZ_CP138395.1
Description Escherichia coli strain 101EVA plasmid p101EVA-2, complete sequence
Source refseq
Topology circular
Length 46570 bp
GC Content 0.47 %
Created at NCBI Nov. 22, 2023



Assembly

Genome Data Information

Accession GCF_033802405.1
Assembly Coverage 437


Biosample

Curated Collection Information
Accession 38124879

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Singapore
Original Query Type name
Coordinates (Lat/Lon) 1.34/103.88
Address Singapore

ECOSYSTEM
Original Query Homo sapiens,Bacterial pure culture,feces
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP037995.1 See Comparison
NZ_CP065103.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP138395.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
CP090279.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP065103.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
CP090279.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP065103.1 See Comparison
NZ_CP065103.1 See Comparison
NZ_CP058827.1 See Comparison
CP090279.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP058827.1 See Comparison
CP090279.1 See Comparison
NZ_CP065103.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP149814.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
NZ_CP081814.1 See Comparison
CP090279.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP065103.1 See Comparison
NZ_CP149814.1 See Comparison
CP090279.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
NZ_CP058827.1 See Comparison
NZ_CP081814.1 See Comparison
NZ_CP037995.1 See Comparison
NZ_CP065103.1 See Comparison
NZ_CP123250.1 See Comparison
NZ_CP149814.1 See Comparison
CP090279.1 See Comparison
NZ_CP055185.1 See Comparison
NZ_CP055050.1 See Comparison
NZ_CP055073.1 See Comparison
NZ_CP081814.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2