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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP065102.1
Sequence
Nucleotide Information
Accession
NZ_CP065102.1
Description
Salmonella enterica subsp. enterica strain SENT0058 plasmid pS58-CMY-105k, complete sequence
Source
refseq
Topology
circular
Length
105084 bp
GC Content
0.52 %
Created at NCBI
Sept. 3, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (59201)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Assembly
Genome Data Information
Accession
GCF_031039735.1
Assembly Coverage
240
Biosample
Curated Collection Information
Accession
16807077
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Taiwan
Original Query Type
name
Coordinates (Lat/Lon)
23.60/120.84
Address
Taiwan
ECOSYSTEM
Original Query
Homo sapiens,cell culture,stool
Classification
cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP065107.1
NZ_CP065106.1
NZ_CP065105.1
NZ_CP065104.1
NZ_CP065103.1
NZ_CP065101.1
Similar Plasmids
based on Mash distance
NZ_CP065102.1
See Comparison
NZ_CP149264.1
See Comparison
NZ_CP149264.1
See Comparison
NZ_CP149264.1
See Comparison
NZ_CP149264.1
See Comparison
NZ_CP149264.1
See Comparison
NZ_CP149264.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore