Plasmid NZ_CP058219.1
Sequence
Nucleotide Information
| Accession | NZ_CP058219.1 |
|---|---|
| Description | Escherichia coli Nissle 1917 plasmid pMUT2, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 5514 bp |
| GC Content | 0.46 % |
| Created at NCBI | Jan. 25, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli Nissle 1917 (316435) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain | Escherichia_coli_Nissle_1917 (316435) |
Biosample
Curated Collection Information
| Accession | 15325684 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Germany |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 51.08/10.42 |
| Address | Germany |
ECOSYSTEM
| Original Query | Homo sapiens,pure culture,feces |
|---|---|
| Classification | cell_culture,fecal,gastrointestinal_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | Kiwa anti-phage protein KwaB-like domain-containing protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | type II toxin-antitoxin system RelE/ParE family toxin | copy | ||
| PGAG | type II toxin-antitoxin system RelB/DinJ family antitoxin | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | kwaA | copy | ||
| MOB-typer | rep_cluster_2486 | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 9 of 9 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | CP022687_00005 | MOBP | 1292 | 2806 | plus | 99.802 | 100 | 0 | 999 |
| replicon | CP023342_00005 | rep_cluster_2486 | 3447 | 4481 | plus | 100 | 100 | 0 | 1912 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |