Plasmid NZ_CP023342.1

Sequence

Nucleotide Information

Accession NZ_CP023342.1
Description Escherichia coli Nissle 1917 plasmid pMUT2, complete sequence
Source refseq
Topology circular
Length 5514 bp
GC Content 0.46 %
Created at NCBI Sept. 18, 2018



Assembly

Genome Data Information

Accession GCF_003546975.1
Assembly Coverage 299.1


Biosample

Curated Collection Information
Accession 7451663

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Germany,Freiburg
Original Query Type name
Coordinates (Lat/Lon) 48.00/7.85
Address Germany,Freiburg

ECOSYSTEM
Original Query Homo sapiens,cell culture,feces,stool
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP148106.1 See Comparison
NZ_CP069671.1 See Comparison
NZ_CP069634.1 See Comparison
NZ_CP069631.1 See Comparison
NZ_CP069637.1 See Comparison
NZ_CP069622.1 See Comparison
NZ_CP069625.1 See Comparison
NZ_CP069640.1 See Comparison
NZ_CP069628.1 See Comparison
NZ_CP069643.1 See Comparison
NZ_CP058219.1 See Comparison
CP042609.1 See Comparison
NZ_CP148106.1 See Comparison
NZ_CP035487.1 See Comparison
NZ_CP023342.1 See Comparison
NZ_CP058219.1 See Comparison
NZ_CP069634.1 See Comparison
NZ_CP069631.1 See Comparison
NZ_CP069637.1 See Comparison
NZ_CP069622.1 See Comparison
NZ_CP069625.1 See Comparison
NZ_CP069640.1 See Comparison
NZ_CP069628.1 See Comparison
NZ_CP069643.1 See Comparison
NZ_CP058219.1 See Comparison
NZ_CP069671.1 See Comparison
CP042609.1 See Comparison
NZ_CP069634.1 See Comparison
NZ_CP069631.1 See Comparison
NZ_CP069637.1 See Comparison
NZ_CP069622.1 See Comparison
NZ_CP069625.1 See Comparison
NZ_CP069640.1 See Comparison
NZ_CP069628.1 See Comparison
NZ_CP069643.1 See Comparison
NZ_CP035487.1 See Comparison
NZ_CP148106.1 See Comparison
NZ_CP069634.1 See Comparison
CP042609.1 See Comparison
NZ_CP069671.1 See Comparison
NZ_CP035487.1 See Comparison
NZ_CP148106.1 See Comparison
NZ_CP069631.1 See Comparison
NZ_CP069637.1 See Comparison
NZ_CP069622.1 See Comparison
NZ_CP069625.1 See Comparison
NZ_CP069640.1 See Comparison
NZ_CP069628.1 See Comparison
NZ_CP069643.1 See Comparison
CP042609.1 See Comparison
NZ_CP058219.1 See Comparison
NZ_CP069671.1 See Comparison
NZ_CP035487.1 See Comparison
NZ_CP069634.1 See Comparison
NZ_CP148106.1 See Comparison
NZ_CP069631.1 See Comparison
NZ_CP069637.1 See Comparison
NZ_CP069622.1 See Comparison
NZ_CP069625.1 See Comparison
NZ_CP069640.1 See Comparison
NZ_CP069628.1 See Comparison
NZ_CP069643.1 See Comparison
NZ_CP069634.1 See Comparison
NZ_CP058219.1 See Comparison
NZ_CP069671.1 See Comparison
NZ_CP035487.1 See Comparison
NZ_CP148106.1 See Comparison
CP042609.1 See Comparison
NZ_CP069631.1 See Comparison
NZ_CP069637.1 See Comparison
NZ_CP069622.1 See Comparison
NZ_CP069625.1 See Comparison
NZ_CP069640.1 See Comparison
NZ_CP069628.1 See Comparison
NZ_CP069643.1 See Comparison
CP042609.1 See Comparison
NZ_CP069671.1 See Comparison
NZ_CP058219.1 See Comparison
NZ_CP035487.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore