Plasmid NZ_CP053869.1

Sequence

Nucleotide Information

Accession NZ_CP053869.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain SL7207 plasmid pSL7202-3, complete sequence
Source refseq
Topology circular
Length 8688 bp
GC Content 0.61 %
Created at NCBI June 3, 2020



Assembly

Genome Data Information

Accession GCF_013207105.1
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 5949357

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.4274745N;122.169719W
Original Query Type coordinates
Coordinates (Lat/Lon) 37.43/-122.17
Address Inner Quad, Stanford, Santa Clara County, California, United States

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query non-pathogenic
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NC_013104.1 See Comparison
NC_017719.1 See Comparison
NC_016859.1 See Comparison
AP011959.1 See Comparison
NZ_CP051365.1 See Comparison
NZ_CP053874.1 See Comparison
NZ_CP116476.1 See Comparison
NZ_CP066008.1 See Comparison
NZ_CP063707.1 See Comparison
NC_017719.1 See Comparison
NC_013104.1 See Comparison
AP011959.1 See Comparison
NC_016859.1 See Comparison
NZ_CP066008.1 See Comparison
NZ_CP051365.1 See Comparison
NZ_CP053869.1 See Comparison
NZ_CP053874.1 See Comparison
NC_013104.1 See Comparison
NZ_CP063707.1 See Comparison
NZ_CP116476.1 See Comparison
NZ_CP053874.1 See Comparison
NC_017719.1 See Comparison
NC_016859.1 See Comparison
AP011959.1 See Comparison
NC_013104.1 See Comparison
NZ_CP051365.1 See Comparison
NZ_CP116476.1 See Comparison
NZ_CP066008.1 See Comparison
NZ_CP063707.1 See Comparison
NZ_CP051365.1 See Comparison
NZ_CP053874.1 See Comparison
NZ_CP066008.1 See Comparison
NC_017719.1 See Comparison
NC_016859.1 See Comparison
AP011959.1 See Comparison
NZ_CP116476.1 See Comparison
NZ_CP063707.1 See Comparison
NC_013104.1 See Comparison
NC_017719.1 See Comparison
NC_016859.1 See Comparison
NZ_CP053874.1 See Comparison
AP011959.1 See Comparison
NZ_CP066008.1 See Comparison
NZ_CP051365.1 See Comparison
AP011959.1 See Comparison
NZ_CP116476.1 See Comparison
NC_013104.1 See Comparison
NC_017719.1 See Comparison
NC_016859.1 See Comparison
NZ_CP063707.1 See Comparison
NZ_CP116476.1 See Comparison
NZ_CP066008.1 See Comparison
NZ_CP053874.1 See Comparison
NZ_CP051365.1 See Comparison
NZ_CP063707.1 See Comparison


Identical Plasmids

100% Sequence Identity




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore