Plasmid NZ_CP053867.1
Sequence
Nucleotide Information
| Accession | NZ_CP053867.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Typhimurium strain SL7207 plasmid pSL7202-2a, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 86908 bp |
| GC Content | 0.50 % |
| Created at NCBI | June 3, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (90371) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 5949357 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 37.4274745N;122.169719W |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 37.43/-122.17 |
| Address | Inner Quad, Stanford, Santa Clara County, California, United States |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | non-pathogenic |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NZ_CP053872.1
- Description: Salmonella enterica subsp. enterica serovar Typhimurium strain SS2017 plasmid pSS2017-2a, complete sequence
- Source: refseq
- Created at NCBI: June 3, 2020
-
Host Taxonomy
Assigned Host: Salmonella enterica (90371)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Salmonella (590)
- Species : Salmonella_enterica (28901)
- Strain:
-
Biosample
Accession: 14987684 - GEOGRAPHICAL INFORMATION
- Original Query: 53.89N;27.54E
- Original Query Type: coordinates
- Address: Інстытут бізнесу БДУ, 5, Маскоўская вуліца, Уборкі, Kastrychnitski District, Minsk, 220007, Belarus
- Coordinates (Lat/Lon): 53.89/27.54
- ECOSYSTEM
- Original Query: None
- Classification: None
- Host-associated Taxon:
Visualization
-
Sequence
- Accession: NC_017718.1
- Description: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 plasmid pCol1B9_SL1344, complete sequence
- Source: refseq
- Created at NCBI: March 23, 2012
-
Host Taxonomy
Assigned Host: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (216597)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Salmonella (590)
- Species : Salmonella_enterica (28901)
- Strain : Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 (216597)
-
Biosample
Accession: 3215828 - GEOGRAPHICAL INFORMATION
- Original Query: None
- Original Query Type: None
- Address: None
- Coordinates (Lat/Lon):
- ECOSYSTEM
- Original Query: None
- Classification: None
- Host-associated Taxon:
Visualization
-
Sequence
- Accession: NC_017675.1
- Description: Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 plasmid TY474p2, complete sequence
- Source: refseq
- Created at NCBI: May 8, 2012
-
Host Taxonomy
Assigned Host: Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 (909946)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Salmonella (590)
- Species : Salmonella_enterica (28901)
- Strain : Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 (909946)
-
Biosample
Accession: 2602988 - GEOGRAPHICAL INFORMATION
- Original Query: None
- Original Query Type: None
- Address: None
- Coordinates (Lat/Lon):
- ECOSYSTEM
- Original Query: None
- Classification: None
- Host-associated Taxon:
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | repA | copy | ||
| PGAG | yacA | copy | ||
| PGAG | yacB | copy | ||
| PGAG | 3'-5' exonuclease | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | ProQ/FINO family protein | copy | ||
| PGAG | yagA | copy | ||
| PGAG | colicin Ia central receptor-binding domain-containing protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 111 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_019097 | MOBP | 34312 | 37005 | plus | 95.212 | 99 | 0 | 1684 |
| mate-pair-formation | NC_019097_00056 | MPF_I | 37078 | 39339 | minus | 98.674 | 92 | 0 | 1444 |
| mate-pair-formation | NC_022267_00057 | MPF_I | 47508 | 48707 | minus | 98 | 100 | 0 | 759 |
| mate-pair-formation | NC_019111_00038 | MPF_I | 53485 | 53862 | minus | 96.032 | 94 | 2.000000000000001e-45 | 164 |
| mate-pair-formation | NC_023290_00086 | MPF_I | 53916 | 54440 | minus | 99.429 | 100 | 3.43e-100 | 322 |
| mate-pair-formation | NC_015965_00072 | MPF_I | 54443 | 55144 | minus | 99.573 | 100 | 4.56e-153 | 477 |
| mate-pair-formation | NC_019097_00075 | MPF_I | 56439 | 57419 | minus | 99.694 | 100 | 0 | 656 |
| mate-pair-formation | NC_022267_00069 | MPF_I | 57475 | 58122 | minus | 97.685 | 91 | 1.02e-140 | 442 |
| mate-pair-formation | NZ_CM001473_00069 | MPF_I | 58122 | 58466 | minus | 91.379 | 100 | 1.6699999999999998e-54 | 189 |
| mate-pair-formation | NC_019097_00085 | MPF_I | 64342 | 65157 | minus | 99.632 | 100 | 1.02e-177 | 549 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |