Plasmid NZ_CP063707.1
Sequence
Nucleotide Information
| Accession | NZ_CP063707.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Enteritidis strain CP255 plasmid pRSF1010, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 8688 bp |
| GC Content | 0.61 % |
| Created at NCBI | Nov. 5, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (149539) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | sul2 | copy | ||
| amrfinderplus | aph(6)-Id | copy | ||
| amrfinderplus | aph(3'')-Ib | copy | ||
| rgi | APH(3'')-Ib | copy | ||
| PGAG | repC | copy | ||
| PGAG | helicase RepA family protein | copy | ||
| PGAG | urfF | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | DNA-primase RepB domain-containing protein | copy | ||
| PGAG | IncQ-type mobilization protein MobB | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 15 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | CP016527 | MOBQ | 5556 | 5712 | minus | 100 | 100 | 2.28e-76 | 291 |
| replicon | 000192__AM183225_00009 | IncQ1 | 1988 | 2810 | minus | 100 | 96 | 0 | 1520 |
| relaxase | CP022499 | MOBQ | 3341 | 5467 | minus | 100 | 100 | 0 | 1316 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |