Plasmid NZ_CP053041.1

Sequence

Nucleotide Information

Accession NZ_CP053041.1
Description Klebsiella pneumoniae strain P35 plasmid pP35F, complete sequence
Source refseq
Topology circular
Length 3301 bp
GC Content 0.43 %
Created at NCBI Sept. 14, 2020



Assembly

Genome Data Information

Accession GCF_014524525.1
Assembly Coverage 120


Biosample

Curated Collection Information
Accession 14770898

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.597500S;46.643600W
Original Query Type coordinates
Coordinates (Lat/Lon) -23.60/-46.64
Address Hospital São Paulo, 715, Rua Napoleão de Barros, Vila Clementino, Vila Mariana, São Paulo, Região Imediata de São Paulo, Região Metropolitana de São Paulo, Região Geográfica Intermediária de São Paulo, São Paulo, Southeast Region, 04024-002, Brazil

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Sex male

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP053041.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGNERD domain-containing proteincopy
PGAGhypothetical proteincopy
MOB-typerrep_cluster_2358copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 3 of 3 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP000974_00005rep_cluster_235825002981plus96.687910802
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 1 of 1 entry


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2