Plasmid CP052570.1

Sequence

Nucleotide Information

Accession CP052570.1
Description Klebsiella pneumoniae strain A16KP0119 plasmid pA16KP0119-1, complete sequence
Source insd
Topology circular
Length 264923 bp
GC Content 0.52 %
Created at NCBI May 4, 2020



Biosample

Curated Collection Information

Accession 14609859

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.57N;126.98E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.57/126.98
Address Korea Trade Insurance Corporation, 14, 종로 자전거 전용로, Jongno 1-ga, Jongno 1·2·3·4(ilisamsa)-ga-dong, Jongno-gu, Seoul, 03188, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
  • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization




Similar Plasmids

based on Mash distance

CP052534.1 See Comparison
CP052173.1 See Comparison
CP052279.1 See Comparison
NZ_LR890617.1 See Comparison
NZ_CP064247.1 See Comparison
CP110591.1 See Comparison
NZ_CP101547.1 See Comparison
NZ_CP098176.1 See Comparison
CP052173.1 See Comparison
NZ_CP087646.1 See Comparison
MG764551.1 See Comparison
NZ_CP142388.1 See Comparison
CP052534.1 See Comparison
NZ_CP052762.1 See Comparison
CP052279.1 See Comparison
NZ_LR890617.1 See Comparison
CP110591.1 See Comparison
NZ_CP064247.1 See Comparison
NZ_CP098176.1 See Comparison
NZ_CP101547.1 See Comparison
NZ_CP087646.1 See Comparison
NZ_CP052762.1 See Comparison
NZ_CP142388.1 See Comparison
MG764551.1 See Comparison
MG764551.1 See Comparison
CP052534.1 See Comparison
NZ_CP064247.1 See Comparison
CP110591.1 See Comparison
NZ_CP101547.1 See Comparison
NZ_CP098176.1 See Comparison
NZ_CP087646.1 See Comparison
NZ_CP052762.1 See Comparison
CP052173.1 See Comparison
CP052279.1 See Comparison
NZ_LR890617.1 See Comparison
NZ_CP142388.1 See Comparison
CP052570.1 See Comparison
CP052534.1 See Comparison
CP052173.1 See Comparison
CP052279.1 See Comparison
NZ_LR890617.1 See Comparison
NZ_CP052762.1 See Comparison
NZ_CP098176.1 See Comparison
NZ_CP064247.1 See Comparison
CP110591.1 See Comparison
NZ_CP101547.1 See Comparison
NZ_CP087646.1 See Comparison
MG764551.1 See Comparison
NZ_CP142388.1 See Comparison
NZ_CP064247.1 See Comparison
CP052534.1 See Comparison
CP052173.1 See Comparison
CP052279.1 See Comparison
NZ_LR890617.1 See Comparison
NZ_CP064247.1 See Comparison
CP110591.1 See Comparison
NZ_CP101547.1 See Comparison
CP052534.1 See Comparison
NZ_LR890617.1 See Comparison
NZ_CP098176.1 See Comparison
NZ_CP087646.1 See Comparison
NZ_CP052762.1 See Comparison
MG764551.1 See Comparison
NZ_CP142388.1 See Comparison
CP052173.1 See Comparison
CP052279.1 See Comparison
MG764551.1 See Comparison
CP110591.1 See Comparison
NZ_CP101547.1 See Comparison
NZ_CP098176.1 See Comparison
NZ_CP087646.1 See Comparison
NZ_CP052762.1 See Comparison
CP052534.1 See Comparison
NZ_CP142388.1 See Comparison
NZ_LR890617.1 See Comparison
CP052173.1 See Comparison
CP052279.1 See Comparison
NZ_CP098176.1 See Comparison
NZ_CP064247.1 See Comparison
CP110591.1 See Comparison
NZ_CP101547.1 See Comparison
NZ_CP087646.1 See Comparison
NZ_CP142388.1 See Comparison
NZ_CP052762.1 See Comparison
MG764551.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2