Plasmid NZ_CP044325.1

Sequence

Nucleotide Information

Accession	NZ_CP044325.1
Description	Enterococcus faecium strain 15-307-1 plasmid p15-307-1_09, complete sequence
Source	refseq
Topology	circular
Length	4372 bp
GC Content	0.36 %
Created at NCBI	Sept. 25, 2019

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Enterococcus faecium (1352)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Lactobacillales (186826)
Family	Enterococcaceae (81852)
Genus	Enterococcus (1350)
Species	Enterococcus_faecium (1352)
Strain

Assembly

Genome Data Information

Accession	GCF_002973755.2
Assembly Coverage	450

Biosample

Curated Collection Information

Accession	8093650

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	48.6103N;2.4748E
Original Query Type	coordinates
Coordinates (Lat/Lon)	48.61/2.47
Address	15, Rue Maurage, Corbeil-Essonnes, Évry, Essonne, Ile-de-France, Metropolitan France, 91100, France

ECOSYSTEM

Original Query	Homo sapiens,Rectal swab
Classification	gastrointestinal_system,host_associated,rectal
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Rectal carriage
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP041267.2	See Comparison
NZ_CP066397.1	See Comparison
NZ_CP064053.1	See Comparison
NZ_CP059761.1	See Comparison
AP026648.1	See Comparison
AP026639.1	See Comparison
CP063554.1	See Comparison
NZ_CP072584.1	See Comparison
NZ_CP041276.1	See Comparison
NZ_LR135452.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
NZ_LR135380.1	See Comparison
NZ_CP041267.2	See Comparison
AP027238.1	See Comparison
AP027232.1	See Comparison
NZ_CP066397.1	See Comparison
NZ_CP064053.1	See Comparison
NZ_CP041267.2	See Comparison
NZ_CP064053.1	See Comparison
NZ_CP059761.1	See Comparison
AP026648.1	See Comparison
AP026639.1	See Comparison
CP063554.1	See Comparison
NZ_CP072584.1	See Comparison
NZ_CP041276.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
NZ_LR135380.1	See Comparison
NZ_LR135452.1	See Comparison
AP027238.1	See Comparison
AP027232.1	See Comparison
NZ_CP066397.1	See Comparison
NZ_CP044325.1	See Comparison
AP026648.1	See Comparison
NZ_CP059761.1	See Comparison
AP026639.1	See Comparison
CP063554.1	See Comparison
NZ_CP041276.1	See Comparison
NZ_CP072584.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
NZ_LR135380.1	See Comparison
AP027238.1	See Comparison
NZ_LR135452.1	See Comparison
AP027232.1	See Comparison
NZ_CP064053.1	See Comparison
NZ_CP066397.1	See Comparison
NZ_CP041267.2	See Comparison
CP063554.1	See Comparison
NZ_CP059761.1	See Comparison
AP026648.1	See Comparison
AP026639.1	See Comparison
NZ_LR135452.1	See Comparison
NZ_CP072584.1	See Comparison
NZ_LR135380.1	See Comparison
NZ_CP041276.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
AP026648.1	See Comparison
NZ_CP066397.1	See Comparison
NZ_CP059761.1	See Comparison
AP027238.1	See Comparison
AP027232.1	See Comparison
NZ_CP041267.2	See Comparison
NZ_CP064053.1	See Comparison
AP026639.1	See Comparison
CP063554.1	See Comparison
NZ_LR135380.1	See Comparison
NZ_CP072584.1	See Comparison
NZ_CP041276.1	See Comparison
NZ_CP066397.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
NZ_CP041267.2	See Comparison
NZ_LR135452.1	See Comparison
AP027238.1	See Comparison
AP027232.1	See Comparison
CP063554.1	See Comparison
NZ_CP064053.1	See Comparison
NZ_CP059761.1	See Comparison
AP026648.1	See Comparison
AP026639.1	See Comparison
NZ_CP072584.1	See Comparison
NZ_LR135495.1	See Comparison
NZ_CP041276.1	See Comparison
NZ_LR135380.1	See Comparison
AP027232.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135452.1	See Comparison
AP027238.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore