Plasmid NZ_CP041276.1

Sequence

Nucleotide Information

Accession	NZ_CP041276.1
Description	Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S7
Source	refseq
Topology	linear
Length	4372 bp
GC Content	0.36 %
Created at NCBI	Aug. 12, 2019

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Enterococcus faecium (1352)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Lactobacillales (186826)
Family	Enterococcaceae (81852)
Genus	Enterococcus (1350)
Species	Enterococcus_faecium (1352)
Strain

Assembly

Genome Data Information

Accession	GCF_007917315.3
Assembly Coverage	252

Biosample

Curated Collection Information

Accession	12138986

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	56.6744N;12.8578E
Original Query Type	coordinates
Coordinates (Lat/Lon)	56.67/12.86
Address	Stora torg, Östra Förstaden, Halmstad, Halmstads kommun, Halland County, 302 46, Sweden

ECOSYSTEM

Original Query	Homo sapiens,feces
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Liver failure
DOID/SYMP	Liver disease (DOID:409 ) None

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP066397.1	See Comparison
NZ_CP064053.1	See Comparison
NZ_CP044325.1	See Comparison
NZ_CP059761.1	See Comparison
AP026648.1	See Comparison
AP026639.1	See Comparison
CP063554.1	See Comparison
NZ_CP072584.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
NZ_LR135380.1	See Comparison
NZ_LR135452.1	See Comparison
NZ_CP041267.2	See Comparison
AP027238.1	See Comparison
AP027232.1	See Comparison
NZ_CP044325.1	See Comparison
NZ_CP066397.1	See Comparison
NZ_CP064053.1	See Comparison
CP063554.1	See Comparison
NZ_CP059761.1	See Comparison
AP026648.1	See Comparison
AP026639.1	See Comparison
NZ_CP072584.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
NZ_LR135380.1	See Comparison
NZ_CP041267.2	See Comparison
NZ_LR135452.1	See Comparison
AP027238.1	See Comparison
AP027232.1	See Comparison
NZ_CP044325.1	See Comparison
NZ_CP059761.1	See Comparison
NZ_CP066397.1	See Comparison
NZ_CP064053.1	See Comparison
AP026648.1	See Comparison
AP026639.1	See Comparison
NZ_CP072584.1	See Comparison
CP063554.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
NZ_LR135380.1	See Comparison
NZ_CP059761.1	See Comparison
AP027238.1	See Comparison
AP027232.1	See Comparison
NZ_CP066397.1	See Comparison
NZ_CP064053.1	See Comparison
NZ_LR135452.1	See Comparison
NZ_CP041267.2	See Comparison
NZ_CP044325.1	See Comparison
AP026648.1	See Comparison
AP026639.1	See Comparison
NZ_CP072584.1	See Comparison
CP063554.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
NZ_LR135380.1	See Comparison
AP027238.1	See Comparison
NZ_LR135452.1	See Comparison
AP027232.1	See Comparison
NZ_CP041267.2	See Comparison
NZ_CP044325.1	See Comparison
NZ_CP066397.1	See Comparison
NZ_CP064053.1	See Comparison
AP026648.1	See Comparison
NZ_CP059761.1	See Comparison
AP026639.1	See Comparison
CP063554.1	See Comparison
NZ_LR135452.1	See Comparison
NZ_CP072584.1	See Comparison
NZ_CP041276.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
NZ_LR135380.1	See Comparison
AP027238.1	See Comparison
AP027232.1	See Comparison
NZ_CP041267.2	See Comparison
NZ_CP044325.1	See Comparison
NZ_CP066397.1	See Comparison
NZ_CP064053.1	See Comparison
CP063554.1	See Comparison
NZ_CP059761.1	See Comparison
AP026648.1	See Comparison
AP026639.1	See Comparison
AP027238.1	See Comparison
NZ_CP072584.1	See Comparison
NZ_LR135380.1	See Comparison
NZ_LR135452.1	See Comparison
NZ_LR135284.1	See Comparison
NZ_LR135495.1	See Comparison
AP027232.1	See Comparison
NZ_CP041267.2	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore