Plasmid CP063554.1

Sequence

Nucleotide Information

Accession CP063554.1
Description Enterococcus faecium strain ICU-1-2 plasmid pZA1-2_05, complete sequence
Source insd
Topology circular
Length 4372 bp
GC Content 0.36 %
Created at NCBI April 4, 2022



Assembly

Genome Data Information

Accession GCA_022811165.1
Assembly Coverage 261.8


Biosample

Curated Collection Information
Accession 16483165

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 53.33N;10.1E
Original Query Type coordinates
Coordinates (Lat/Lon) 53.33/10.10
Address Zum Woldberg, Winsen (Luhe), Harburg, Lower Saxony, 21423, Germany

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query cardiovascular disease
DOID/SYMP
  • Cardiovascular system disease (DOID:1287 )
    • A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

AP026648.1 See Comparison
AP026639.1 See Comparison
NZ_CP072584.1 See Comparison
NZ_CP041276.1 See Comparison
AP027232.1 See Comparison
NZ_LR135284.1 See Comparison
NZ_LR135495.1 See Comparison
NZ_LR135380.1 See Comparison
NZ_LR135452.1 See Comparison
NZ_CP041267.2 See Comparison
NZ_CP059761.1 See Comparison
NZ_CP044325.1 See Comparison
NZ_CP066397.1 See Comparison
NZ_CP064053.1 See Comparison
AP026648.1 See Comparison
AP026639.1 See Comparison
NZ_CP066397.1 See Comparison
NZ_CP041276.1 See Comparison
NZ_CP041267.2 See Comparison
NZ_CP072584.1 See Comparison
NZ_LR135284.1 See Comparison
NZ_LR135495.1 See Comparison
NZ_LR135380.1 See Comparison
NZ_LR135452.1 See Comparison
AP027232.1 See Comparison
NZ_CP044325.1 See Comparison
NZ_CP064053.1 See Comparison
AP027232.1 See Comparison
NZ_CP059761.1 See Comparison
AP026648.1 See Comparison
AP026639.1 See Comparison
NZ_CP072584.1 See Comparison
NZ_CP041276.1 See Comparison
NZ_LR135284.1 See Comparison
NZ_LR135495.1 See Comparison
NZ_LR135380.1 See Comparison
NZ_LR135452.1 See Comparison
NZ_CP041267.2 See Comparison
NZ_CP059761.1 See Comparison
NZ_CP044325.1 See Comparison
NZ_CP066397.1 See Comparison
NZ_CP064053.1 See Comparison
NZ_LR135284.1 See Comparison
AP026648.1 See Comparison
AP026639.1 See Comparison
NZ_CP072584.1 See Comparison
NZ_CP041276.1 See Comparison
NZ_LR135495.1 See Comparison
NZ_LR135380.1 See Comparison
AP027232.1 See Comparison
NZ_LR135452.1 See Comparison
NZ_CP044325.1 See Comparison
NZ_CP041267.2 See Comparison
NZ_CP064053.1 See Comparison
NZ_CP066397.1 See Comparison
NZ_CP059761.1 See Comparison
NZ_CP072584.1 See Comparison
AP026648.1 See Comparison
AP026639.1 See Comparison
NZ_CP041276.1 See Comparison
NZ_LR135284.1 See Comparison
NZ_LR135495.1 See Comparison
NZ_LR135452.1 See Comparison
NZ_LR135380.1 See Comparison
AP027232.1 See Comparison
AP026648.1 See Comparison
NZ_CP041267.2 See Comparison
NZ_CP044325.1 See Comparison
NZ_CP066397.1 See Comparison
NZ_CP064053.1 See Comparison
NZ_CP059761.1 See Comparison
AP026639.1 See Comparison
CP063554.1 See Comparison
NZ_LR135284.1 See Comparison
NZ_CP072584.1 See Comparison
NZ_CP041276.1 See Comparison
NZ_LR135495.1 See Comparison
NZ_LR135380.1 See Comparison
NZ_LR135452.1 See Comparison
NZ_LR135452.1 See Comparison
AP027232.1 See Comparison
NZ_CP066397.1 See Comparison
NZ_CP064053.1 See Comparison
NZ_CP044325.1 See Comparison
NZ_CP059761.1 See Comparison
AP026648.1 See Comparison
AP026639.1 See Comparison
NZ_LR135380.1 See Comparison
NZ_CP041267.2 See Comparison
NZ_CP072584.1 See Comparison
NZ_CP041276.1 See Comparison
NZ_LR135284.1 See Comparison
NZ_LR135495.1 See Comparison
NZ_CP041267.2 See Comparison
AP027232.1 See Comparison
NZ_CP044325.1 See Comparison
NZ_CP066397.1 See Comparison
NZ_CP064053.1 See Comparison
NZ_CP059761.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2