Plasmid NZ_CP041229.1

Sequence

Nucleotide Information

Accession NZ_CP041229.1
Description Acinetobacter haemolyticus strain AN54 plasmid pAhaeAN54e, complete sequence
Source refseq
Topology circular
Length 45460 bp
GC Content 0.41 %
Created at NCBI June 25, 2019



Assembly

Genome Data Information

Accession GCF_003430865.2
Assembly Coverage 140


Biosample

Curated Collection Information
Accession 8707400

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 19.04N;98.20W
Original Query Type coordinates
Coordinates (Lat/Lon) 19.04/-98.20
Address Spanish Institute of Puebla, #10, Avenida 11 Oriente, Centro Histórico de Puebla, Municipio de Puebla, Puebla, 72000, Mexico

ECOSYSTEM
Original Query Homo sapiens,Peritoneal dialysis fluid
Classification host_associated,peritoneum
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 12 years old
Host-associated Sex male

DISEASE
Original Query End Stage Renal Disease (ESRD),Death,End Stage
DOID/SYMP
  • End stage renal disease (DOID:783 )
    • A chronic kidney disease is characterized by non-functioning kidneys, as the final stage in chronic kidney disease.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP010370.2 See Comparison
NZ_CP010399.1 See Comparison
NC_025116.1 See Comparison
NC_025000.1 See Comparison
NC_019985.2 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_CP010399.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_CP010370.2 See Comparison
NC_025116.1 See Comparison
NC_025000.1 See Comparison
NZ_CP041229.1 See Comparison
NC_019985.2 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_CP010399.1 See Comparison
NZ_CP010370.2 See Comparison
NC_019985.2 See Comparison
NZ_CP123919.1 See Comparison
NZ_KP900015.1 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NC_025116.1 See Comparison
NC_025000.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_OQ773529.1 See Comparison
NC_019281.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_CP010370.2 See Comparison
NZ_CP010399.1 See Comparison
NC_025116.1 See Comparison
NC_025000.1 See Comparison
NC_019268.1 See Comparison
NZ_CP035935.1 See Comparison
NC_019985.2 See Comparison
NZ_CP032278.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP010399.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_CP010370.2 See Comparison
NC_019985.2 See Comparison
NZ_CP133667.1 See Comparison
NZ_OQ773529.1 See Comparison
NC_025116.1 See Comparison
NC_025000.1 See Comparison
NZ_CP035935.1 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_CP010399.1 See Comparison
NC_025116.1 See Comparison
NC_025000.1 See Comparison
NZ_CP010370.2 See Comparison
NC_019985.2 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP010370.2 See Comparison
NC_019985.2 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP010399.1 See Comparison
NC_025116.1 See Comparison
NC_025000.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_KP900015.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2