Plasmid NC_025000.1

Sequence

Nucleotide Information

Accession NC_025000.1
Description Acinetobacter lwoffii plasmid pNDM-Iz4b, complete sequence
Source refseq
Topology circular
Length 46570 bp
GC Content 0.41 %
Created at NCBI Sept. 25, 2014



Biosample

Curated Collection Information
Accession 14226826

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NC_019985.2 See Comparison
NZ_CP010370.2 See Comparison
NZ_CP010399.1 See Comparison
NC_025116.1 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP041229.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_CP041229.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_CP010399.1 See Comparison
NC_025116.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_CP010370.2 See Comparison
NC_019985.2 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_CP041229.1 See Comparison
NZ_CP010370.2 See Comparison
NC_019985.2 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP010399.1 See Comparison
NC_025116.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_CP010370.2 See Comparison
NZ_CP010399.1 See Comparison
NC_025116.1 See Comparison
NZ_CP041229.1 See Comparison
NC_019985.2 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_CP041229.1 See Comparison
NZ_CP010370.2 See Comparison
NZ_CP010399.1 See Comparison
NC_025116.1 See Comparison
NC_019985.2 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_CP010399.1 See Comparison
NZ_CP010370.2 See Comparison
NC_025116.1 See Comparison
NC_025000.1 See Comparison
NZ_CP032278.1 See Comparison
NC_019985.2 See Comparison
NZ_CP041229.1 See Comparison
NZ_CP035935.1 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_KP900015.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_CP010370.2 See Comparison
NZ_CP010399.1 See Comparison
NC_025116.1 See Comparison
NC_019985.2 See Comparison
NZ_CP041229.1 See Comparison
NC_019281.1 See Comparison
NC_019268.1 See Comparison
NZ_CP133667.1 See Comparison
NZ_CP035935.1 See Comparison
NZ_CP032278.1 See Comparison
NZ_OR508935.1 See Comparison
NZ_CP137748.1 See Comparison
NZ_CP123919.1 See Comparison
NZ_OQ773529.1 See Comparison
NZ_KP900015.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2