Plasmid NZ_CP035935.1

Sequence

Nucleotide Information

Accession	NZ_CP035935.1
Description	Acinetobacter cumulans strain WCHAc060092 plasmid pNDM1_060092, complete sequence
Source	refseq
Topology	circular
Length	48560 bp
GC Content	0.41 %
Created at NCBI	Feb. 14, 2019

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Acinetobacter cumulans (2136182)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Moraxellales (2887326)
Family	Moraxellaceae (468)
Genus	Acinetobacter (469)
Species	Acinetobacter_cumulans (2136182)
Strain

Assembly

Genome Data Information

Accession	GCF_003024525.3
Assembly Coverage	200

Biosample

Curated Collection Information

Accession	8772519

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China,Chengdu,Sichuan
Original Query Type	name
Coordinates (Lat/Lon)	30.64/104.07
Address	China,Chengdu,Sichuan

ECOSYSTEM

Original Query	Pure Culture,Sewage
Classification	cell_culture,sewage,wastewater
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP010370.2	See Comparison
NZ_CP010399.1	See Comparison
NC_025116.1	See Comparison
NC_025000.1	See Comparison
NC_023322.1	See Comparison
NC_019985.2	See Comparison
NC_019281.1	See Comparison
NC_019268.1	See Comparison
NZ_CP041229.1	See Comparison
NZ_CP032278.1	See Comparison
NZ_OR508935.1	See Comparison
NZ_CP137748.1	See Comparison
NZ_CP133667.1	See Comparison
NZ_OQ773529.1	See Comparison
NZ_CP123919.1	See Comparison
NZ_KP900015.1	See Comparison
NZ_CP010370.2	See Comparison
NC_023322.1	See Comparison
NZ_CP010399.1	See Comparison
NC_025116.1	See Comparison
NC_025000.1	See Comparison
NC_019985.2	See Comparison
NC_019281.1	See Comparison
NC_019268.1	See Comparison
NZ_CP041229.1	See Comparison
NZ_CP032278.1	See Comparison
NZ_CP137748.1	See Comparison
NZ_CP133667.1	See Comparison
NZ_OR508935.1	See Comparison
NZ_KP900015.1	See Comparison
NZ_OQ773529.1	See Comparison
NZ_CP123919.1	See Comparison
NZ_CP010399.1	See Comparison
NZ_CP010399.1	See Comparison
NC_025116.1	See Comparison
NC_025000.1	See Comparison
NZ_OR508935.1	See Comparison
NZ_OQ773529.1	See Comparison
NZ_CP123919.1	See Comparison
NZ_CP010370.2	See Comparison
NC_019985.2	See Comparison
NZ_CP010370.2	See Comparison
NC_023322.1	See Comparison
NC_019985.2	See Comparison
NC_019281.1	See Comparison
NC_019268.1	See Comparison
NZ_CP041229.1	See Comparison
NZ_CP032278.1	See Comparison
NZ_CP137748.1	See Comparison
NZ_CP133667.1	See Comparison
NZ_KP900015.1	See Comparison
NC_025116.1	See Comparison
NC_025000.1	See Comparison
NC_023322.1	See Comparison
NC_019281.1	See Comparison
NC_019268.1	See Comparison
NZ_CP032278.1	See Comparison
NZ_CP041229.1	See Comparison
NZ_CP137748.1	See Comparison
NZ_CP133667.1	See Comparison
NZ_OR508935.1	See Comparison
NC_019985.2	See Comparison
NZ_OQ773529.1	See Comparison
NZ_CP123919.1	See Comparison
NZ_CP010370.2	See Comparison
NZ_KP900015.1	See Comparison
NC_019281.1	See Comparison
NZ_CP010399.1	See Comparison
NC_025116.1	See Comparison
NC_025000.1	See Comparison
NC_019268.1	See Comparison
NZ_CP133667.1	See Comparison
NC_023322.1	See Comparison
NZ_CP041229.1	See Comparison
NZ_CP032278.1	See Comparison
NZ_OR508935.1	See Comparison
NZ_CP137748.1	See Comparison
NZ_KP900015.1	See Comparison
NZ_CP123919.1	See Comparison
NZ_OQ773529.1	See Comparison
NZ_CP010399.1	See Comparison
NZ_CP010370.2	See Comparison
NC_025116.1	See Comparison
NC_025000.1	See Comparison
NC_023322.1	See Comparison
NC_019281.1	See Comparison
NC_019268.1	See Comparison
NC_019985.2	See Comparison
NZ_CP032278.1	See Comparison
NZ_CP041229.1	See Comparison
NZ_CP137748.1	See Comparison
NZ_CP133667.1	See Comparison
NZ_OR508935.1	See Comparison
NZ_CP123919.1	See Comparison
NZ_OQ773529.1	See Comparison
NZ_CP010399.1	See Comparison
NZ_KP900015.1	See Comparison
NZ_CP010370.2	See Comparison
NC_025116.1	See Comparison
NC_025000.1	See Comparison
NZ_CP041229.1	See Comparison
NC_023322.1	See Comparison
NC_019985.2	See Comparison
NC_019281.1	See Comparison
NC_019268.1	See Comparison
NZ_CP032278.1	See Comparison
NZ_CP035935.1	See Comparison
NZ_KP900015.1	See Comparison
NZ_OR508935.1	See Comparison
NZ_CP137748.1	See Comparison
NZ_CP123919.1	See Comparison
NZ_CP133667.1	See Comparison
NZ_OQ773529.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2