Plasmid NZ_CP036324.1

Sequence

Nucleotide Information

Accession NZ_CP036324.1
Description Klebsiella pneumoniae strain VBA2172 plasmid p4_VBA2172
Source refseq
Topology linear
Length 4986 bp
GC Content 0.45 %
Created at NCBI March 1, 2019



Assembly

Genome Data Information

Accession GCF_002300675.1
Assembly Coverage 69.57


Biosample

Curated Collection Information
Accession 7572687

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9165N;79.1325E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP093918.1 See Comparison
CP067715.1 See Comparison
NZ_CP083060.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079184.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP130678.1 See Comparison
NZ_CP035127.1 See Comparison
NZ_CP113194.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP093918.1 See Comparison
CP067715.1 See Comparison
NZ_CP083060.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079184.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP035127.1 See Comparison
NZ_CP130678.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP083060.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP113194.1 See Comparison
NZ_CP093918.1 See Comparison
CP067715.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079184.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP036324.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP035127.1 See Comparison
NZ_CP130678.1 See Comparison
NZ_CP093918.1 See Comparison
NZ_CP113194.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP079184.1 See Comparison
NZ_CP083060.1 See Comparison
CP067715.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP035127.1 See Comparison
NZ_CP130678.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP113194.1 See Comparison
NZ_CP093918.1 See Comparison
CP067715.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079184.1 See Comparison
NZ_CP035127.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP083060.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP130678.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP093918.1 See Comparison
NZ_CP113194.1 See Comparison
CP067715.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP130678.1 See Comparison
NZ_CP083060.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079184.1 See Comparison
NZ_CP035127.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP113194.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore