Plasmid NZ_CP035127.1

Sequence

Nucleotide Information

Accession NZ_CP035127.1
Description Escherichia coli strain EC25 plasmid pEC25-4, complete sequence
Source refseq
Topology circular
Length 4991 bp
GC Content 0.45 %
Created at NCBI Jan. 23, 2019



Assembly

Genome Data Information

Accession GCF_004088295.1
Assembly Coverage 100


Biosample

Curated Collection Information

Accession 10743440

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Hangzhou
Original Query Type name
Coordinates (Lat/Lon) 30.25/120.21
Address China,Hangzhou

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Pulmonary infection
DOID/SYMP
  • Lung disease (DOID:850 )
  • A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.
  • Disease infectious agent (DOID:0050117 )
  • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP079612.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079184.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP138760.1 See Comparison
NZ_CP036334.1 See Comparison
NZ_CP036324.1 See Comparison
NZ_CP033951.1 See Comparison
NZ_CP130678.1 See Comparison
CP067715.1 See Comparison
NZ_CP093918.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP113194.1 See Comparison
NZ_CP079641.1 See Comparison
NZ_CP083060.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079184.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP035127.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP036334.1 See Comparison
NZ_CP036324.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP033951.1 See Comparison
NZ_CP138760.1 See Comparison
NZ_CP130678.1 See Comparison
NZ_CP093918.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP113194.1 See Comparison
NZ_CP079641.1 See Comparison
NZ_CP083060.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079184.1 See Comparison
CP067715.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP036334.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP036324.1 See Comparison
NZ_CP138760.1 See Comparison
NZ_CP033951.1 See Comparison
NZ_CP130678.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP083060.1 See Comparison
NZ_CP093918.1 See Comparison
NZ_CP113194.1 See Comparison
CP067715.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079184.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP033951.1 See Comparison
NZ_CP138760.1 See Comparison
NZ_CP130678.1 See Comparison
NZ_CP079641.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP036334.1 See Comparison
NZ_CP036324.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP113194.1 See Comparison
NZ_CP093918.1 See Comparison
NZ_CP079641.1 See Comparison
NZ_CP083060.1 See Comparison
CP067715.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP079184.1 See Comparison
NZ_CP036334.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP036324.1 See Comparison
NZ_CP138760.1 See Comparison
NZ_CP033951.1 See Comparison
NZ_CP070423.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP130678.1 See Comparison
NZ_CP070457.1 See Comparison
NZ_CP113194.1 See Comparison
NZ_CP070443.1 See Comparison
NZ_CP079641.1 See Comparison
NZ_CP093918.1 See Comparison
NZ_CP083060.1 See Comparison
NZ_CP079178.1 See Comparison
NZ_CP079184.1 See Comparison
CP067715.1 See Comparison
NZ_CP079697.1 See Comparison
NZ_CP079191.1 See Comparison
NZ_CP079687.1 See Comparison
NZ_CP079612.1 See Comparison
NZ_CP072471.1 See Comparison
NZ_CP033951.1 See Comparison
NZ_CP036334.1 See Comparison
NZ_CP036324.1 See Comparison
NZ_CP138760.1 See Comparison
NZ_CP095561.1 See Comparison
NZ_CP130678.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore