Plasmid NZ_CP035389.1
Sequence
Nucleotide Information
| Accession | NZ_CP035389.1 |
|---|---|
| Description | Enterobacter hormaechei strain S11_16 plasmid unnamed4, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 2495 bp |
| GC Content | 0.51 % |
| Created at NCBI | Feb. 1, 2019 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Enterobacter hormaechei (158836) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Enterobacter (547) |
| Species | Enterobacter_hormaechei (158836) |
| Strain |
Biosample
Curated Collection Information
| Accession | 10755318 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 52.451397N;1.941253W |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 52.45/-1.94 |
| Address | Queen Elizabeth Hospital, Metchley Lane, Bournbrook, Metchley, Birmingham, West Midlands Combined Authority, England, B17 0JH, United Kingdom |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NZ_CP126875.1
- Description: Enterobacter hormaechei strain Ehh_3 plasmid pEh3_2, complete sequence
- Source: refseq
- Created at NCBI: Aug. 25, 2023
-
Host Taxonomy
Assigned Host: Enterobacter hormaechei (158836)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Enterobacter (547)
- Species : Enterobacter_hormaechei (158836)
- Strain:
-
Biosample
Accession: 35394385 - GEOGRAPHICAL INFORMATION
- Original Query: Switzerland
- Original Query Type: name
- Address: Switzerland
- Coordinates (Lat/Lon): 46.80/8.23
- ECOSYSTEM
- Original Query: Homo sapiens,isolated bacterial culture,tissue
- Classification: cell_culture,host_associated
- Host-associated Taxon:
- Homo sapiens (9606)
Visualization
-
Sequence
- Accession: NZ_CP042511.1
- Description: Leclercia adecarboxylata strain E1 plasmid pE1_006, complete sequence
- Source: refseq
- Created at NCBI: June 4, 2020
-
Host Taxonomy
Assigned Host: Leclercia adecarboxylata (83655)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Leclercia (83654)
- Species : Leclercia_adecarboxylata (83655)
- Strain:
-
Biosample
Accession: 12289304 - GEOGRAPHICAL INFORMATION
- Original Query: Australia,Sydney
- Original Query Type: name
- Address: Australia,Sydney
- Coordinates (Lat/Lon): -33.85/151.22
- ECOSYSTEM
- Original Query: Whole organism,Shower 3
- Classification: anthropogenic,host_associated
- Host-associated Taxon:
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | YgdI/YgdR family lipoprotein | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | rep_cluster_2335 | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 5 of 5 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | NC_017722 | MOB_unknown | 82 | 170 | plus | 100 | 100 | 6.86e-39 | 165 |
| replicon | KU302809_00001 | rep_cluster_2335 | 1410 | 1939 | minus | 88.598 | 88 | 0 | 643 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |