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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP029656.1
Sequence
Nucleotide Information
Accession
NZ_CP029656.1
Description
Staphylococcus aureus strain AR_0468 plasmid unnamed1, complete sequence
Source
refseq
Topology
circular
Length
27245 bp
GC Content
0.27 %
Created at NCBI
June 13, 2018
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Staphylococcus aureus (1280)
Lineage
Superkingdom
Bacteria (2)
Phylum
Bacillota (1239)
Class
Bacilli (91061)
Order
Bacillales (1385)
Family
Staphylococcaceae (90964)
Genus
Staphylococcus (1279)
Species
Staphylococcus_aureus (1280)
Strain
Assembly
Genome Data Information
Accession
GCF_003203615.1
Assembly Coverage
13.98
Biosample
Curated Collection Information
Accession
7291561
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
None
Original Query Type
None
Coordinates (Lat/Lon)
Address
None
ECOSYSTEM
Original Query
None
Classification
None
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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CP127648.1
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CP127628.1
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CP127623.1
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CP127027.1
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CP127621.1
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CP127595.1
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CP127585.1
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CP127559.1
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CP127569.1
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CP127545.1
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CP127650.1
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CP127659.1
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NZ_CP152311.1
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CP152124.1
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CP151584.1
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CP151571.1
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NZ_CP047862.1
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NZ_CP047864.1
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NZ_CP047855.1
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NZ_CP047866.1
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NZ_CP047818.1
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CP049579.1
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CP049541.1
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CP049479.1
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CP049477.1
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CP051936.1
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CP051931.1
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CP049422.1
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CP127648.1
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NZ_CP047821.1
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CP049527.1
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CP051964.1
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CP051936.1
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CP051987.1
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CP051931.1
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CP051928.1
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CP049489.1
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CP049475.1
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CP049436.1
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CP049422.1
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NZ_CP117237.1
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NZ_CP094664.1
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NZ_CP062464.1
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NZ_CP062456.1
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NZ_CP062424.1
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CP049541.1
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NZ_CP062371.1
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NZ_CP062359.1
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NZ_CP062379.1
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NZ_CP010891.1
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NZ_CP083729.1
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NZ_CP018769.1
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NZ_LT671860.1
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NC_017344.1
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NC_019010.1
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NC_019008.1
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NC_019007.1
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NC_018972.1
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NC_013318.1
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NC_018976.1
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CP030589.1
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CP030687.1
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CP030691.1
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CP030543.1
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CP030627.1
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CP030504.1
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CP030450.1
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CP030440.1
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CP030594.1
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CP030546.1
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CP030711.1
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CP030472.1
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CP030500.1
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CP030551.1
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NZ_CP029662.1
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NZ_CP029672.1
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NZ_CP029670.1
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NZ_CP029654.1
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NZ_CP029659.1
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NZ_CP029679.1
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NZ_CP029081.1
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NZ_CP029085.1
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NZ_CP017678.1
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NZ_CP156176.1
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CP127545.1
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NZ_CP127018.1
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CP127027.1
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CP127650.1
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CP127659.1
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CP127648.1
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CP127628.1
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CP127623.1
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CP127621.1
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CP127595.1
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CP127585.1
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CP127559.1
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CP127569.1
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CP155818.1
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NZ_CP152315.1
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NZ_CP154864.1
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NZ_CP152311.1
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NZ_CP154862.1
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CP152124.1
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NZ_CP151814.1
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NZ_CP150889.1
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CP151752.1
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CP151584.1
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CP151571.1
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CP151569.1
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NZ_CP151139.1
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NZ_CP151117.1
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CP049489.1
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CP150108.1
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NZ_MH785250.1
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NZ_MH785232.1
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NZ_CP045867.1
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NZ_CP147707.1
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NZ_CP053355.1
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NZ_CP053641.1
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NZ_KR270450.1
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NZ_KF831356.1
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NZ_CP047862.1
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NZ_CP047864.1
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NZ_CP047860.1
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NZ_CP047855.1
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NZ_CP047866.1
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NZ_CP047818.1
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NZ_CP047821.1
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NZ_CP047858.1
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CP051936.1
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CP051931.1
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CP051928.1
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CP049487.1
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CP049479.1
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CP052007.1
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CP049477.1
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CP049579.1
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CP049475.1
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CP049436.1
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CP049541.1
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CP051987.1
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CP051964.1
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CP049527.1
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CP049424.1
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CP049422.1
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CP049401.1
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NZ_CP094664.1
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NZ_CP117237.1
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NZ_CP062394.1
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NZ_CP062464.1
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NZ_CP062456.1
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NZ_CP062424.1
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NZ_CP062369.1
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NZ_CP062371.1
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NZ_CP062359.1
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NZ_CP062379.1
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NZ_CP062389.1
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NZ_CP018769.1
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NZ_CP083729.1
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NC_018976.1
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NZ_CP010891.1
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NZ_LT671860.1
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NC_019010.1
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NC_019008.1
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NC_019007.1
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NC_018972.1
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CP030589.1
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NC_017344.1
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NC_013318.1
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CP030682.1
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CP030691.1
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CP030687.1
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CP030543.1
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CP030627.1
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CP030594.1
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CP030504.1
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CP030450.1
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CP030546.1
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CP030440.1
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CP030472.1
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CP030711.1
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CP030500.1
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CP030551.1
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CP030423.1
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CP030389.1
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CP030392.1
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NZ_CP040666.1
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NZ_CP040624.1
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NZ_CP029662.1
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NZ_CP035792.1
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NZ_LR130512.1
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NZ_CP029475.1
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NZ_CP029672.1
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NZ_CP029670.1
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NZ_CP029654.1
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NZ_CP029659.1
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NZ_CP029679.1
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NZ_CP132363.1
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NZ_CP029081.1
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NZ_CP029085.1
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NZ_CP017678.1
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NZ_CP154864.1
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NZ_CP127018.1
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CP127027.1
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CP127650.1
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CP127659.1
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CP127648.1
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CP127628.1
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CP127623.1
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CP127621.1
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CP127595.1
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CP127585.1
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CP127559.1
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CP127569.1
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CP127545.1
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NZ_CP156176.1
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CP151571.1
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CP155818.1
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NZ_CP152311.1
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NZ_CP154862.1
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NZ_CP152315.1
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CP152124.1
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CP151569.1
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NZ_CP151139.1
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NZ_CP151814.1
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CP151752.1
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NZ_CP151117.1
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CP151584.1
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CP150108.1
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NZ_CP147707.1
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NZ_CP150889.1
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NZ_CP053355.1
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NZ_CP053641.1
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NZ_MH785250.1
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NZ_MH785232.1
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NZ_CP045867.1
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NZ_KR270450.1
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NZ_KF831356.1
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NZ_CP047862.1
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NZ_CP047864.1
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NZ_CP047860.1
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NZ_CP047855.1
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NZ_CP047866.1
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NZ_CP047818.1
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NZ_CP047821.1
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NZ_CP047858.1
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CP052007.1
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CP051936.1
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CP051931.1
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CP051928.1
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CP051987.1
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CP051964.1
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CP049579.1
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NZ_CP094664.1
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CP049541.1
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CP049527.1
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NZ_CP117237.1
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CP049489.1
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CP049487.1
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CP049479.1
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CP049477.1
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CP049475.1
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CP049436.1
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CP049424.1
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CP049422.1
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CP049401.1
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NZ_CP062464.1
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NZ_CP062456.1
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NZ_CP062424.1
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NZ_CP018769.1
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NZ_CP083729.1
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NZ_CP062394.1
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NZ_CP062369.1
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NZ_CP062371.1
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NZ_CP062359.1
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NZ_CP062379.1
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NZ_CP062389.1
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NZ_LT671860.1
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NC_018976.1
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NZ_CP010891.1
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NC_019010.1
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NC_019008.1
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NC_017344.1
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NC_019007.1
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NC_018972.1
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CP030691.1
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NC_013318.1
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CP030682.1
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CP030589.1
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CP030627.1
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CP030687.1
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CP030594.1
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CP030546.1
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CP030543.1
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CP030504.1
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CP030450.1
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CP030440.1
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CP030711.1
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CP030500.1
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CP030551.1
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CP030472.1
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CP030423.1
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CP030389.1
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CP030392.1
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NZ_LR130512.1
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NZ_CP040624.1
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NZ_CP040666.1
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NZ_CP035792.1
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NZ_CP029654.1
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NZ_CP029475.1
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NZ_CP029662.1
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NZ_CP029672.1
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NZ_CP029670.1
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NZ_CP029659.1
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NZ_CP017678.1
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NZ_CP029081.1
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NZ_CP029085.1
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NZ_CP029679.1
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Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
Detected typing markers by plasmidfinder
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2