Plasmid NZ_CP083729.1
Sequence
Nucleotide Information
| Accession | NZ_CP083729.1 |
|---|---|
| Description | Staphylococcus aureus strain MR254 plasmid pMR254-1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 27440 bp |
| GC Content | 0.27 % |
| Created at NCBI | Sept. 29, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Staphylococcus aureus (1280) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Bacillota (1239) |
| Class | Bacilli (91061) |
| Order | Bacillales (1385) |
| Family | Staphylococcaceae (90964) |
| Genus | Staphylococcus (1279) |
| Species | Staphylococcus_aureus (1280) |
| Strain |
Biosample
Curated Collection Information
| Accession | 21341543 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 34.41/86.03 |
| Address | China |
ECOSYSTEM
| Original Query | Homo sapiens,whole organism |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaI | copy | ||
| amrfinderplus | blaR1 | copy | ||
| amrfinderplus | blaZ | copy | ||
| rgi | PC1 beta-lactamase (blaZ) | copy | ||
| amrfinderplus | sej | copy | ||
| amrfinderplus | cadD | copy | ||
| amrfinderplus | sed | copy | ||
| amrfinderplus | ser | copy | ||
| PGAG | replication initiator protein A | copy | ||
| PGAG | hypothetical protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 32 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | JN106164 | MOBV | 1491 | 1594 | plus | 84.762 | 99 | 2.98e-20 | 104 |
| oriT | AJ639924 | MOBV | 25181 | 25344 | minus | 100 | 100 | 3.08e-80 | 303 |
| replicon | HF937104 | rep_cluster_1215 | 1 | 945 | plus | 99.894 | 100 | 0 | 1740 |
| replicon | 000261__GQ900456 | rep_cluster_1017 | 1075 | 1253 | plus | 92.179 | 95 | 3.73e-65 | 254 |
| replicon | 000262__NC_007169_00002 | rep_cluster_1017 | 25425 | 26163 | minus | 86.23 | 86 | 0 | 802 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 5 of 5 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |