Plasmid CP030627.1

Sequence

Nucleotide Information

Accession CP030627.1
Description Staphylococcus aureus strain ER01823.3 plasmid unnamed1, complete sequence
Source insd
Topology circular
Length 28788 bp
GC Content 0.27 %
Created at NCBI Oct. 10, 2019



Assembly

Genome Data Information

Accession GCA_008936235.1
Assembly Coverage 229.212


Biosample

Curated Collection Information
Accession 9483963

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.7903114N;73.9528738W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP047862.1 See Comparison
NZ_CP047864.1 See Comparison
NZ_CP047860.1 See Comparison
NZ_CP047866.1 See Comparison
NZ_CP047858.1 See Comparison
CP052007.1 See Comparison
CP051964.1 See Comparison
CP051928.1 See Comparison
CP049527.1 See Comparison
CP049487.1 See Comparison
CP049479.1 See Comparison
CP049477.1 See Comparison
CP049475.1 See Comparison
CP049422.1 See Comparison
CP049401.1 See Comparison
NZ_CP018769.1 See Comparison
NZ_CP062464.1 See Comparison
NZ_CP062369.1 See Comparison
NZ_CP062371.1 See Comparison
NZ_CP062359.1 See Comparison
NZ_CP062379.1 See Comparison
NC_019007.1 See Comparison
NZ_CP010891.1 See Comparison
NC_018972.1 See Comparison
CP030589.1 See Comparison
NC_013318.1 See Comparison
CP030594.1 See Comparison
CP030682.1 See Comparison
CP030546.1 See Comparison
CP030687.1 See Comparison
CP030711.1 See Comparison
CP030500.1 See Comparison
CP030691.1 See Comparison
CP155818.1 See Comparison
NZ_CP029654.1 See Comparison
NZ_CP029679.1 See Comparison
NZ_CP029081.1 See Comparison
CP127650.1 See Comparison
CP127659.1 See Comparison
CP127648.1 See Comparison
CP127595.1 See Comparison
CP127585.1 See Comparison
CP127569.1 See Comparison
CP030472.1 See Comparison
CP030392.1 See Comparison
NZ_CP040666.1 See Comparison
NZ_CP040624.1 See Comparison
NZ_CP035792.1 See Comparison
NZ_CP029662.1 See Comparison
NZ_CP029672.1 See Comparison
NZ_CP029656.1 See Comparison
NZ_CP151814.1 See Comparison
NZ_CP156176.1 See Comparison
NZ_CP147707.1 See Comparison
NZ_CP150889.1 See Comparison
NZ_CP053641.1 See Comparison
NZ_MH785232.1 See Comparison
CP049527.1 See Comparison
NZ_CP047860.1 See Comparison
NZ_CP047866.1 See Comparison
NZ_CP047858.1 See Comparison
CP052007.1 See Comparison
CP051964.1 See Comparison
CP051928.1 See Comparison
NZ_CP047862.1 See Comparison
NZ_CP047864.1 See Comparison
CP049479.1 See Comparison
CP049477.1 See Comparison
CP049475.1 See Comparison
CP049422.1 See Comparison
CP049487.1 See Comparison
CP049401.1 See Comparison
NZ_CP010891.1 See Comparison
NZ_CP062369.1 See Comparison
NZ_CP062371.1 See Comparison
NZ_CP062359.1 See Comparison
NZ_CP062379.1 See Comparison
NZ_CP018769.1 See Comparison
NZ_CP062464.1 See Comparison
NC_013318.1 See Comparison
NC_018972.1 See Comparison
CP030594.1 See Comparison
CP030589.1 See Comparison
NC_019007.1 See Comparison
CP030546.1 See Comparison
CP030711.1 See Comparison
CP030682.1 See Comparison
CP030687.1 See Comparison
CP030691.1 See Comparison
CP030500.1 See Comparison
NZ_CP035792.1 See Comparison
CP030472.1 See Comparison
CP030392.1 See Comparison
NZ_CP040666.1 See Comparison
NZ_CP040624.1 See Comparison
CP127659.1 See Comparison
NZ_CP029654.1 See Comparison
NZ_CP029679.1 See Comparison
NZ_CP029081.1 See Comparison
NZ_CP029662.1 See Comparison
NZ_CP029672.1 See Comparison
NZ_CP029656.1 See Comparison
CP127648.1 See Comparison
CP127595.1 See Comparison
CP127650.1 See Comparison
CP127585.1 See Comparison
CP127569.1 See Comparison
NZ_CP047858.1 See Comparison
NZ_CP151814.1 See Comparison
NZ_CP150889.1 See Comparison
NZ_CP053641.1 See Comparison
NZ_MH785232.1 See Comparison
NZ_CP047862.1 See Comparison
NZ_CP047864.1 See Comparison
NZ_CP047860.1 See Comparison
NZ_CP047866.1 See Comparison
NZ_CP156176.1 See Comparison
CP155818.1 See Comparison
NZ_CP147707.1 See Comparison
CP049422.1 See Comparison
CP052007.1 See Comparison
CP051964.1 See Comparison
CP051928.1 See Comparison
CP049527.1 See Comparison
CP049401.1 See Comparison
CP049487.1 See Comparison
NZ_CP018769.1 See Comparison
CP049479.1 See Comparison
CP049477.1 See Comparison
CP049475.1 See Comparison
NZ_CP062369.1 See Comparison
NZ_CP062371.1 See Comparison
NZ_CP062359.1 See Comparison
NZ_CP062379.1 See Comparison
NZ_CP062464.1 See Comparison
NZ_CP010891.1 See Comparison
NC_013318.1 See Comparison
NC_019007.1 See Comparison
NC_018972.1 See Comparison
CP030546.1 See Comparison
CP030589.1 See Comparison
CP030682.1 See Comparison
CP030687.1 See Comparison
CP030691.1 See Comparison
CP030711.1 See Comparison
CP030594.1 See Comparison
CP030472.1 See Comparison
CP030500.1 See Comparison
NZ_CP040666.1 See Comparison
CP030392.1 See Comparison
NZ_CP040624.1 See Comparison
NZ_CP029679.1 See Comparison
NZ_CP035792.1 See Comparison
NZ_CP029081.1 See Comparison
NZ_CP029662.1 See Comparison
NZ_CP029672.1 See Comparison
NZ_CP029656.1 See Comparison
NZ_CP029654.1 See Comparison
CP127648.1 See Comparison
CP127595.1 See Comparison
CP127650.1 See Comparison
CP127659.1 See Comparison
CP127585.1 See Comparison
CP127569.1 See Comparison
NZ_CP151814.1 See Comparison
NZ_CP156176.1 See Comparison
CP155818.1 See Comparison
NZ_CP047858.1 See Comparison
NZ_CP147707.1 See Comparison
NZ_CP150889.1 See Comparison
NZ_CP053641.1 See Comparison
NZ_MH785232.1 See Comparison
NZ_CP047862.1 See Comparison
NZ_CP047864.1 See Comparison
NZ_CP047860.1 See Comparison
NZ_CP047866.1 See Comparison
CP049422.1 See Comparison
CP049527.1 See Comparison
CP049487.1 See Comparison
CP049479.1 See Comparison
CP049477.1 See Comparison
CP049475.1 See Comparison
CP052007.1 See Comparison
CP051964.1 See Comparison
CP051928.1 See Comparison
CP049401.1 See Comparison
NZ_CP062464.1 See Comparison
NZ_CP062369.1 See Comparison
NZ_CP062371.1 See Comparison
NZ_CP062359.1 See Comparison
NZ_CP062379.1 See Comparison
NZ_CP018769.1 See Comparison
NZ_CP010891.1 See Comparison
NC_013318.1 See Comparison
NC_019007.1 See Comparison
NC_018972.1 See Comparison
CP030472.1 See Comparison
CP030589.1 See Comparison
CP030682.1 See Comparison
CP030687.1 See Comparison
CP030691.1 See Comparison
CP030594.1 See Comparison
CP030546.1 See Comparison
CP030392.1 See Comparison
CP030711.1 See Comparison
CP030500.1 See Comparison
NZ_CP040666.1 See Comparison
NZ_CP040624.1 See Comparison
NZ_CP029679.1 See Comparison
NZ_CP035792.1 See Comparison
NZ_CP029081.1 See Comparison
NZ_CP029662.1 See Comparison
NZ_CP029672.1 See Comparison
NZ_CP029656.1 See Comparison
NZ_CP029654.1 See Comparison
NZ_CP156176.1 See Comparison
CP127650.1 See Comparison
CP127659.1 See Comparison
CP127648.1 See Comparison
CP127595.1 See Comparison
CP127585.1 See Comparison
CP127569.1 See Comparison
CP155818.1 See Comparison
NZ_CP151814.1 See Comparison
NZ_CP053641.1 See Comparison
NZ_CP147707.1 See Comparison
NZ_CP150889.1 See Comparison
NZ_MH785232.1 See Comparison
NZ_CP047860.1 See Comparison
NZ_CP047866.1 See Comparison
NZ_CP047858.1 See Comparison
CP052007.1 See Comparison
NZ_CP047862.1 See Comparison
NZ_CP047864.1 See Comparison
CP051964.1 See Comparison
CP051928.1 See Comparison
CP049422.1 See Comparison
CP049527.1 See Comparison
CP049401.1 See Comparison
NC_019007.1 See Comparison
CP049487.1 See Comparison
CP049479.1 See Comparison
CP049477.1 See Comparison
CP049475.1 See Comparison
NZ_CP062369.1 See Comparison
NZ_CP062371.1 See Comparison
NZ_CP062464.1 See Comparison
NZ_CP062359.1 See Comparison
NZ_CP062379.1 See Comparison
NZ_CP018769.1 See Comparison
NZ_CP010891.1 See Comparison
NC_018972.1 See Comparison
CP030589.1 See Comparison
NC_013318.1 See Comparison
CP030392.1 See Comparison
CP030682.1 See Comparison
CP030687.1 See Comparison
CP030711.1 See Comparison
CP030500.1 See Comparison
NZ_CP040666.1 See Comparison
CP030472.1 See Comparison
CP030691.1 See Comparison
CP030627.1 See Comparison
CP030594.1 See Comparison
CP030546.1 See Comparison
NZ_CP040624.1 See Comparison
NZ_CP035792.1 See Comparison
CP052007.1 See Comparison
NZ_CP029662.1 See Comparison
NZ_CP029672.1 See Comparison
NZ_CP029656.1 See Comparison
NZ_CP029654.1 See Comparison
NZ_CP029679.1 See Comparison
CP127569.1 See Comparison
NZ_CP147707.1 See Comparison
NZ_MH785232.1 See Comparison
CP051964.1 See Comparison
CP051928.1 See Comparison
NZ_CP029081.1 See Comparison
CP127650.1 See Comparison
CP127659.1 See Comparison
CP127648.1 See Comparison
CP127595.1 See Comparison
CP127585.1 See Comparison
NZ_CP156176.1 See Comparison
CP155818.1 See Comparison
NZ_CP151814.1 See Comparison
NZ_CP150889.1 See Comparison
NZ_CP053641.1 See Comparison
NZ_CP047862.1 See Comparison
NZ_CP047864.1 See Comparison
NZ_CP047860.1 See Comparison
NZ_CP047866.1 See Comparison
NZ_CP047858.1 See Comparison
CP049527.1 See Comparison
CP049401.1 See Comparison
CP049487.1 See Comparison
CP049479.1 See Comparison
CP049477.1 See Comparison
CP049475.1 See Comparison
NZ_CP062369.1 See Comparison
CP049422.1 See Comparison
NZ_CP062464.1 See Comparison
NZ_CP062371.1 See Comparison
NZ_CP062359.1 See Comparison
NZ_CP062379.1 See Comparison
NZ_CP018769.1 See Comparison
NC_019007.1 See Comparison
NZ_CP010891.1 See Comparison
NC_018972.1 See Comparison
CP030589.1 See Comparison
NC_013318.1 See Comparison
CP030682.1 See Comparison
CP030687.1 See Comparison
CP030691.1 See Comparison
CP030594.1 See Comparison
CP030546.1 See Comparison
NZ_CP040624.1 See Comparison
CP030711.1 See Comparison
CP030500.1 See Comparison
CP030472.1 See Comparison
CP030392.1 See Comparison
NZ_CP029081.1 See Comparison
NZ_CP040666.1 See Comparison
NZ_CP035792.1 See Comparison
NZ_CP029662.1 See Comparison
NZ_CP029672.1 See Comparison
NZ_CP029656.1 See Comparison
NZ_CP029654.1 See Comparison
NZ_CP156176.1 See Comparison
NZ_CP029679.1 See Comparison
CP127650.1 See Comparison
CP127659.1 See Comparison
CP127648.1 See Comparison
CP127595.1 See Comparison
CP127585.1 See Comparison
CP127569.1 See Comparison
CP155818.1 See Comparison
NZ_CP151814.1 See Comparison
NZ_CP147707.1 See Comparison
NZ_CP150889.1 See Comparison
CP052007.1 See Comparison
NZ_CP053641.1 See Comparison
NZ_CP047862.1 See Comparison
NZ_CP047864.1 See Comparison
NZ_CP047860.1 See Comparison
NZ_CP047866.1 See Comparison
NZ_CP047858.1 See Comparison
NZ_MH785232.1 See Comparison
CP051928.1 See Comparison
CP051964.1 See Comparison
CP049487.1 See Comparison
NZ_CP018769.1 See Comparison
CP049479.1 See Comparison
CP049477.1 See Comparison
CP049475.1 See Comparison
CP049422.1 See Comparison
CP049401.1 See Comparison
NZ_CP062464.1 See Comparison
CP049527.1 See Comparison
NZ_CP062369.1 See Comparison
NZ_CP062371.1 See Comparison
NZ_CP062359.1 See Comparison
NZ_CP062379.1 See Comparison
CP030472.1 See Comparison
NZ_CP010891.1 See Comparison
NC_013318.1 See Comparison
CP030691.1 See Comparison
CP030594.1 See Comparison
CP030546.1 See Comparison
CP030711.1 See Comparison
CP030500.1 See Comparison
NC_019007.1 See Comparison
NC_018972.1 See Comparison
CP030589.1 See Comparison
CP030682.1 See Comparison
CP030687.1 See Comparison
CP030392.1 See Comparison
NZ_CP029081.1 See Comparison
NZ_CP040624.1 See Comparison
NZ_CP029662.1 See Comparison
NZ_CP029672.1 See Comparison
NZ_CP029656.1 See Comparison
NZ_CP029654.1 See Comparison
NZ_CP040666.1 See Comparison
NZ_CP035792.1 See Comparison
NZ_CP156176.1 See Comparison
CP127650.1 See Comparison
CP127659.1 See Comparison
CP127648.1 See Comparison
NZ_CP029679.1 See Comparison
CP127595.1 See Comparison
CP127585.1 See Comparison
CP127569.1 See Comparison
CP155818.1 See Comparison
NZ_CP151814.1 See Comparison
NZ_CP150889.1 See Comparison
NZ_MH785232.1 See Comparison
NZ_CP053641.1 See Comparison
NZ_CP147707.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2