Plasmid NZ_CP025267.1

Sequence

Nucleotide Information

Accession NZ_CP025267.1
Description Acinetobacter baumannii isolate SMC_Paed_Ab_BL01 plasmid pSMC_AB_BL01_1, complete sequence
Source refseq
Topology circular
Length 74241 bp
GC Content 0.34 %
Created at NCBI Dec. 22, 2017



Assembly

Genome Data Information

Accession GCF_002843665.1
Assembly Coverage 200


Biosample

Curated Collection Information

Accession 8054861

PLASMID INFORMATION
Genotype ST191

GEOGRAPHICAL INFORMATION
Original Query 37.4882N;127.0856E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.49/127.09
Address Samsung Medical Center, 81, Irwon-ro, Irwon-dong, Irwon bon-dong, Gangnam-gu, Seoul, 06351, South Korea

ECOSYSTEM
Original Query Homo sapiens,Blood, Central line
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 15
Host-associated Sex female

DISEASE
Original Query haemophagocytic lymphohistiocytosis,death
DOID/SYMP
  • Hemophagocytic lymphohistiocytosis (DOID:0050120 )
  • A lymphatic system disease that is characterized by an expansion of the monocyte-macrophage population and intense hemophagocytosis. It can occur de novo, but more often occurs in the setting of another disorder, usually an infection or a malignancy. A clinical picture of fever, hepatosplenomegaly, lymphadenopathy and peripheral pancytopenia. The morphologic hallmark of this syndrome is the phagocytosis of hematopoietic elements by morphologically normal macrophages.

Visualization




Similar Plasmids

based on Mash distance

NZ_MK386681.1 See Comparison
NZ_CP096689.1 See Comparison
CP099785.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_MK386681.1 See Comparison
CP099785.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
CP099785.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP014216.1 See Comparison
CP099785.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_MK386681.1 See Comparison
CP099785.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP014216.1 See Comparison
CP099785.1 See Comparison
CP099785.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP137074.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2