Plasmid CP099785.1

Sequence

Nucleotide Information

Accession CP099785.1
Description Acinetobacter baumannii strain NCCP 15989 plasmid unnamed, complete sequence
Source insd
Topology circular
Length 75310 bp
GC Content 0.34 %
Created at NCBI July 3, 2022



Assembly

Genome Data Information

Accession GCA_024126255.1
Assembly Coverage 327.5


Biosample

Curated Collection Information
Accession 29272488

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea,Jeollabuk-do
Original Query Type name
Coordinates (Lat/Lon) 35.82/127.11
Address South Korea,Jeollabuk-do

ECOSYSTEM
Original Query Homo sapiens,single cell,sputum
Classification cell_culture,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_MK386681.1 See Comparison
CP099785.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_MK386681.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2