Plasmid NZ_CP014216.1

Sequence

Nucleotide Information

Accession NZ_CP014216.1
Description Acinetobacter baumannii strain YU-R612 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 74241 bp
GC Content 0.34 %
Created at NCBI Feb. 4, 2016



Assembly

Genome Data Information

Accession GCF_001543995.1
Assembly Coverage 227


Biosample

Curated Collection Information
Accession 4448797

PLASMID INFORMATION
BIOSAMPLE_beta_lactamase_family OXA
BIOSAMPLE_carbapenemase yes
BIOSAMPLE_edta_inhibitor_tested yes

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query sepsis
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP137074.1 See Comparison
CP099785.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP096739.1 See Comparison
CP099785.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_CP025267.1 See Comparison
CP099785.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP096739.1 See Comparison
CP099785.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
CP099785.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP137074.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP137074.1 See Comparison
CP099785.1 See Comparison
NZ_CP096689.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP014216.1 See Comparison
NZ_CP020573.1 See Comparison
NZ_CP020593.1 See Comparison
NZ_MK386681.1 See Comparison
NZ_CP025267.1 See Comparison
NZ_CP137074.1 See Comparison
CP099785.1 See Comparison
NZ_CP096739.1 See Comparison
NZ_CP096689.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2