Plasmid NZ_CP023793.1

Sequence

Nucleotide Information

Accession NZ_CP023793.1
Description Enterococcus faecium strain Efaecium_ER04462.3A plasmid pER04462.3A.4, complete sequence
Source refseq
Topology circular
Length 4374 bp
GC Content 0.37 %
Created at NCBI Jan. 11, 2018



Assembly

Genome Data Information

Accession GCF_002848685.1
Assembly Coverage 31.2611


Biosample

Curated Collection Information
Accession 7679730

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.789990N;73.953689W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address The Mount Sinai Hospital, 1, Park Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10129, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP071966.1 See Comparison
NZ_CP018826.1 See Comparison
NZ_CP018833.1 See Comparison
NZ_CP040705.1 See Comparison
NZ_LR135315.1 See Comparison
NZ_LR135337.1 See Comparison
NZ_LR135329.1 See Comparison
NZ_LR135322.1 See Comparison
NZ_CP023803.1 See Comparison
NZ_CP023788.1 See Comparison
NZ_CP023811.1 See Comparison
NZ_CP023807.1 See Comparison
NZ_CP023798.1 See Comparison
NZ_CP023783.1 See Comparison
NZ_CP131846.1 See Comparison
NZ_CP066604.1 See Comparison
NZ_CP066479.1 See Comparison
NZ_CP066465.1 See Comparison
NZ_CP066394.1 See Comparison
NZ_CP066426.1 See Comparison
NZ_CP066666.1 See Comparison
NZ_AP026571.1 See Comparison
AP026578.1 See Comparison
NZ_CP096216.1 See Comparison
NZ_CP096224.1 See Comparison
NZ_CP040705.1 See Comparison
NZ_CP076487.1 See Comparison
NZ_CP076482.1 See Comparison
NZ_CP076476.1 See Comparison
NZ_OU015713.1 See Comparison
NZ_OU015952.1 See Comparison
NZ_OU016043.1 See Comparison
NZ_OU016033.1 See Comparison
NZ_CP071966.1 See Comparison
NZ_CP018826.1 See Comparison
NZ_CP018833.1 See Comparison
NZ_AP026571.1 See Comparison
NZ_LR135315.1 See Comparison
NZ_LR135337.1 See Comparison
NZ_LR135329.1 See Comparison
NZ_LR135322.1 See Comparison
NZ_CP131846.1 See Comparison
NZ_CP066479.1 See Comparison
NZ_CP066465.1 See Comparison
NZ_CP066394.1 See Comparison
NZ_CP066426.1 See Comparison
NZ_CP023803.1 See Comparison
NZ_CP023788.1 See Comparison
NZ_CP023811.1 See Comparison
NZ_CP023807.1 See Comparison
NZ_CP023798.1 See Comparison
NZ_CP023783.1 See Comparison
NZ_CP066604.1 See Comparison
NZ_CP066666.1 See Comparison
AP026578.1 See Comparison
NZ_OU016033.1 See Comparison
NZ_CP096216.1 See Comparison
NZ_CP096224.1 See Comparison
NZ_CP076487.1 See Comparison
NZ_CP076482.1 See Comparison
NZ_CP076476.1 See Comparison
NZ_CP071966.1 See Comparison
NZ_OU015713.1 See Comparison
NZ_OU015952.1 See Comparison
NZ_OU016043.1 See Comparison
NZ_CP040705.1 See Comparison
NZ_CP018826.1 See Comparison
NZ_CP018833.1 See Comparison
NZ_LR135315.1 See Comparison
NZ_LR135337.1 See Comparison
NZ_LR135329.1 See Comparison
NZ_LR135322.1 See Comparison
AP026578.1 See Comparison
NZ_CP023803.1 See Comparison
NZ_CP023788.1 See Comparison
NZ_CP023811.1 See Comparison
NZ_CP023807.1 See Comparison
NZ_CP023798.1 See Comparison
NZ_CP023783.1 See Comparison
NZ_AP026571.1 See Comparison
NZ_CP131846.1 See Comparison
NZ_CP066604.1 See Comparison
NZ_CP066666.1 See Comparison
NZ_CP066479.1 See Comparison
NZ_CP066465.1 See Comparison
NZ_CP066394.1 See Comparison
NZ_CP066426.1 See Comparison
NZ_CP076487.1 See Comparison
NZ_CP096216.1 See Comparison
NZ_CP096224.1 See Comparison
NZ_CP076482.1 See Comparison
NZ_CP076476.1 See Comparison
NZ_CP018826.1 See Comparison
NZ_OU015713.1 See Comparison
NZ_OU015952.1 See Comparison
NZ_OU016043.1 See Comparison
NZ_OU016033.1 See Comparison
NZ_CP071966.1 See Comparison
NZ_CP018833.1 See Comparison
NZ_LR135315.1 See Comparison
NZ_CP040705.1 See Comparison
NZ_LR135329.1 See Comparison
NZ_LR135322.1 See Comparison
NZ_LR135337.1 See Comparison
NZ_CP076487.1 See Comparison
NZ_CP023803.1 See Comparison
NZ_CP023793.1 See Comparison
NZ_CP023788.1 See Comparison
NZ_CP023811.1 See Comparison
NZ_CP023807.1 See Comparison
NZ_CP023798.1 See Comparison
NZ_CP023783.1 See Comparison
NZ_CP131846.1 See Comparison
NZ_CP066604.1 See Comparison
NZ_CP066666.1 See Comparison
NZ_CP066479.1 See Comparison
NZ_CP066465.1 See Comparison
NZ_CP066394.1 See Comparison
NZ_CP066426.1 See Comparison
NZ_AP026571.1 See Comparison
AP026578.1 See Comparison
NZ_CP096216.1 See Comparison
NZ_CP096224.1 See Comparison
NZ_CP076482.1 See Comparison
NZ_CP076476.1 See Comparison
NZ_OU015713.1 See Comparison
NZ_OU015952.1 See Comparison
NZ_OU016043.1 See Comparison
NZ_OU016033.1 See Comparison
NZ_LR135329.1 See Comparison
NZ_CP071966.1 See Comparison
NZ_CP018826.1 See Comparison
NZ_CP018833.1 See Comparison
NZ_CP040705.1 See Comparison
NZ_LR135315.1 See Comparison
NZ_LR135337.1 See Comparison
NZ_LR135322.1 See Comparison
NZ_AP026571.1 See Comparison
NZ_CP023803.1 See Comparison
NZ_CP023788.1 See Comparison
NZ_CP023811.1 See Comparison
NZ_CP023807.1 See Comparison
NZ_CP023798.1 See Comparison
NZ_CP023783.1 See Comparison
NZ_CP066604.1 See Comparison
NZ_CP066666.1 See Comparison
NZ_CP066479.1 See Comparison
NZ_CP066465.1 See Comparison
NZ_CP066394.1 See Comparison
NZ_CP066426.1 See Comparison
NZ_CP131846.1 See Comparison
AP026578.1 See Comparison
NZ_CP096216.1 See Comparison
NZ_CP096224.1 See Comparison
NZ_CP071966.1 See Comparison
NZ_CP076487.1 See Comparison
NZ_CP076482.1 See Comparison
NZ_CP076476.1 See Comparison
NZ_OU015713.1 See Comparison
NZ_OU015952.1 See Comparison
NZ_OU016043.1 See Comparison
NZ_OU016033.1 See Comparison
NZ_CP018826.1 See Comparison
NZ_CP018833.1 See Comparison
NZ_CP040705.1 See Comparison
NZ_CP131846.1 See Comparison
NZ_LR135315.1 See Comparison
NZ_LR135337.1 See Comparison
NZ_CP023803.1 See Comparison
NZ_CP023788.1 See Comparison
NZ_CP023811.1 See Comparison
NZ_CP023807.1 See Comparison
NZ_CP023798.1 See Comparison
NZ_CP023783.1 See Comparison
NZ_LR135329.1 See Comparison
NZ_LR135322.1 See Comparison
AP026578.1 See Comparison
NZ_CP066604.1 See Comparison
NZ_CP066666.1 See Comparison
NZ_CP066479.1 See Comparison
NZ_CP066465.1 See Comparison
NZ_CP066394.1 See Comparison
NZ_CP066426.1 See Comparison
NZ_AP026571.1 See Comparison
NZ_OU016033.1 See Comparison
NZ_CP076487.1 See Comparison
NZ_CP076482.1 See Comparison
NZ_CP076476.1 See Comparison
NZ_OU015713.1 See Comparison
NZ_OU015952.1 See Comparison
NZ_CP096216.1 See Comparison
NZ_CP096224.1 See Comparison
NZ_OU016043.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP023803.1
    • Description: Enterococcus faecium strain Efaecium_ER04526.5A plasmid pER04526.5A.4, complete sequence
    • Source: refseq
    • Created at NCBI: Jan. 11, 2018

  • Host Taxonomy
    Assigned Host: Enterococcus faecium (1352)
  • Biosample
    Accession: 7679733
  • GEOGRAPHICAL INFORMATION
    • Original Query: 40.789990N;73.953689W
    • Original Query Type: coordinates
    • Address: The Mount Sinai Hospital, 1, Park Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10129, United States
    • Coordinates (Lat/Lon): 40.79/-73.95
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bacteremia
    • DOID/SYMP:
      • Bacterial infectious disease (DOID:104 )
        • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
        • Has_material_basis_in: ['bacteria']

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP023807.1
    • Description: Enterococcus faecium strain Efaecium_ER04619.3A isolate isolate plasmid pER04619.3A.4, complete sequence
    • Source: refseq
    • Created at NCBI: Jan. 11, 2018

  • Host Taxonomy
    Assigned Host: Enterococcus faecium (1352)
  • Biosample
    Accession: 7679734
  • GEOGRAPHICAL INFORMATION
    • Original Query: 40.789990N;73.953689W
    • Original Query Type: coordinates
    • Address: The Mount Sinai Hospital, 1, Park Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10129, United States
    • Coordinates (Lat/Lon): 40.79/-73.95
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bacteremia
    • DOID/SYMP:
      • Bacterial infectious disease (DOID:104 )
        • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
        • Has_material_basis_in: ['bacteria']

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP023783.1
    • Description: Enterococcus faecium strain Efaecium_ER03933.3A isolate isolate plasmid pER93933.3A.4, complete sequence
    • Source: refseq
    • Created at NCBI: Jan. 10, 2018

  • Host Taxonomy
    Assigned Host: Enterococcus faecium (1352)
  • Biosample
    Accession: 7679728
  • GEOGRAPHICAL INFORMATION
    • Original Query: 40.789990N;73.953689W
    • Original Query Type: coordinates
    • Address: The Mount Sinai Hospital, 1, Park Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10129, United States
    • Coordinates (Lat/Lon): 40.79/-73.95
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bacteremia
    • DOID/SYMP:
      • Bacterial infectious disease (DOID:104 )
        • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
        • Has_material_basis_in: ['bacteria']

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP023788.1
    • Description: Enterococcus faecium strain Efaecium_ER04120.3A plasmid pER04120.3A.4, complete sequence
    • Source: refseq
    • Created at NCBI: Jan. 11, 2018

  • Host Taxonomy
    Assigned Host: Enterococcus faecium (1352)
  • Biosample
    Accession: 7679729
  • GEOGRAPHICAL INFORMATION
    • Original Query: 40.789990N;73.953689W
    • Original Query Type: coordinates
    • Address: The Mount Sinai Hospital, 1, Park Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10129, United States
    • Coordinates (Lat/Lon): 40.79/-73.95
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bacteremia
    • DOID/SYMP:
      • Bacterial infectious disease (DOID:104 )
        • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
        • Has_material_basis_in: ['bacteria']

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore