Plasmid NZ_CP045940.1

Sequence

Nucleotide Information

Accession NZ_CP045940.1
Description Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_08, complete sequence
Source refseq
Topology circular
Length 2690 bp
GC Content 0.46 %
Created at NCBI Nov. 19, 2019



Assembly

Genome Data Information

Accession GCF_009664515.1
Assembly Coverage 103


Biosample

Curated Collection Information
Accession 13191651

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP023653.1 See Comparison
CP038000.1 See Comparison
NZ_CP019695.1 See Comparison
NZ_CP127086.1 See Comparison
NZ_CP130068.1 See Comparison
CP128226.1 See Comparison
NZ_CP146294.2 See Comparison
NZ_CP146300.2 See Comparison
NZ_CP151355.1 See Comparison
NZ_CP151321.1 See Comparison
NZ_CP151400.1 See Comparison
NZ_CP151309.1 See Comparison
NZ_CP151370.1 See Comparison
NZ_CP151341.1 See Comparison
NZ_CP151389.1 See Comparison
NZ_CP151380.1 See Comparison
NZ_CP151362.1 See Comparison
NZ_CP148377.1 See Comparison
NZ_CP140630.1 See Comparison
NZ_CP109780.1 See Comparison
NZ_OP113953.1 See Comparison
NZ_CP045940.1 See Comparison
NZ_CP053760.1 See Comparison
NZ_CP110408.1 See Comparison
NZ_CP110402.1 See Comparison
NZ_MW133281.1 See Comparison
NZ_MW133282.1 See Comparison
NZ_MW133280.1 See Comparison
CP038000.1 See Comparison
NZ_CP023653.1 See Comparison
NZ_CP019695.1 See Comparison
NZ_CP130068.1 See Comparison
NZ_CP127086.1 See Comparison
CP128226.1 See Comparison
NZ_CP146294.2 See Comparison
NZ_CP146300.2 See Comparison
NZ_CP148377.1 See Comparison
NZ_CP151355.1 See Comparison
NZ_CP151321.1 See Comparison
NZ_CP151400.1 See Comparison
NZ_CP151309.1 See Comparison
NZ_CP151370.1 See Comparison
NZ_CP151341.1 See Comparison
NZ_CP151389.1 See Comparison
NZ_CP151380.1 See Comparison
NZ_CP151362.1 See Comparison
NZ_CP140630.1 See Comparison
NZ_OP113953.1 See Comparison
NZ_MW133282.1 See Comparison
NZ_CP110408.1 See Comparison
NZ_CP110402.1 See Comparison
NZ_CP109780.1 See Comparison
NZ_CP053760.1 See Comparison
CP038000.1 See Comparison
NZ_MW133281.1 See Comparison
NZ_MW133280.1 See Comparison
NZ_CP023653.1 See Comparison
NZ_CP127086.1 See Comparison
NZ_CP019695.1 See Comparison
NZ_CP130068.1 See Comparison
NZ_CP148377.1 See Comparison
NZ_CP146300.2 See Comparison
NZ_CP151355.1 See Comparison
NZ_CP151321.1 See Comparison
NZ_CP151400.1 See Comparison
NZ_CP151309.1 See Comparison
NZ_CP151370.1 See Comparison
NZ_CP151341.1 See Comparison
NZ_CP151389.1 See Comparison
NZ_CP151380.1 See Comparison
NZ_CP151362.1 See Comparison
CP128226.1 See Comparison
NZ_CP146294.2 See Comparison
NZ_CP140630.1 See Comparison
NZ_CP053760.1 See Comparison
NZ_CP110408.1 See Comparison
NZ_CP110402.1 See Comparison
NZ_OP113953.1 See Comparison
NZ_CP109780.1 See Comparison
NZ_MW133281.1 See Comparison
NZ_MW133282.1 See Comparison
NZ_MW133280.1 See Comparison
CP038000.1 See Comparison
NZ_CP023653.1 See Comparison
NZ_CP127086.1 See Comparison
NZ_CP019695.1 See Comparison
NZ_CP151355.1 See Comparison
NZ_CP130068.1 See Comparison
CP128226.1 See Comparison
NZ_CP146294.2 See Comparison
NZ_CP146300.2 See Comparison
NZ_CP151321.1 See Comparison
NZ_CP151400.1 See Comparison
NZ_CP151309.1 See Comparison
NZ_CP151370.1 See Comparison
NZ_CP151341.1 See Comparison
NZ_CP151389.1 See Comparison
NZ_CP151380.1 See Comparison
NZ_CP151362.1 See Comparison
NZ_CP109780.1 See Comparison
NZ_CP110408.1 See Comparison
NZ_CP110402.1 See Comparison
NZ_CP148377.1 See Comparison
NZ_CP140630.1 See Comparison
NZ_OP113953.1 See Comparison
CP038000.1 See Comparison
NZ_CP053760.1 See Comparison
NZ_MW133281.1 See Comparison
NZ_MW133280.1 See Comparison
NZ_CP023653.1 See Comparison
NZ_MW133282.1 See Comparison
NZ_CP127086.1 See Comparison
NZ_CP019695.1 See Comparison
NZ_CP130068.1 See Comparison
NZ_CP151355.1 See Comparison
CP128226.1 See Comparison
NZ_CP146294.2 See Comparison
NZ_CP146300.2 See Comparison
NZ_CP151321.1 See Comparison
NZ_CP151400.1 See Comparison
NZ_CP151309.1 See Comparison
NZ_CP151370.1 See Comparison
NZ_CP151341.1 See Comparison
NZ_CP151389.1 See Comparison
NZ_CP151380.1 See Comparison
NZ_CP151362.1 See Comparison
NZ_OP113953.1 See Comparison
NZ_CP148377.1 See Comparison
NZ_CP140630.1 See Comparison
NZ_CP110408.1 See Comparison
NZ_CP110402.1 See Comparison
NZ_MW133282.1 See Comparison
NZ_CP109780.1 See Comparison
NZ_CP053760.1 See Comparison
NZ_CP023653.1 See Comparison
NZ_MW133281.1 See Comparison
NZ_MW133280.1 See Comparison
CP128226.1 See Comparison
NZ_CP019695.1 See Comparison
NZ_CP127086.1 See Comparison
CP038000.1 See Comparison
NZ_CP146294.2 See Comparison
NZ_CP148377.1 See Comparison
NZ_CP146300.2 See Comparison
NZ_CP151355.1 See Comparison
NZ_CP151321.1 See Comparison
NZ_CP151400.1 See Comparison
NZ_CP151309.1 See Comparison
NZ_CP151370.1 See Comparison
NZ_CP151341.1 See Comparison
NZ_CP151389.1 See Comparison
NZ_CP151380.1 See Comparison
NZ_CP151362.1 See Comparison
NZ_CP140630.1 See Comparison
NZ_OP113953.1 See Comparison
NZ_CP130068.1 See Comparison
NZ_CP109780.1 See Comparison
NZ_CP053760.1 See Comparison
NZ_MW133281.1 See Comparison
NZ_MW133280.1 See Comparison
NZ_CP110408.1 See Comparison
NZ_CP110402.1 See Comparison
NZ_MW133282.1 See Comparison


Identical Plasmids

100% Sequence Identity



Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore