Plasmid NZ_CP137480.1

Sequence

Nucleotide Information

Accession NZ_CP137480.1
Description Citrobacter portucalensis strain F321 plasmid pF321-NDM, complete sequence
Source refseq
Topology circular
Length 110795 bp
GC Content 0.55 %
Created at NCBI Nov. 4, 2023



Assembly

Genome Data Information

Accession GCF_033232945.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 37933146

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.86N;121.56E
Original Query Type coordinates
Coordinates (Lat/Lon) 29.86/121.56
Address Baihe, Yinzhou District, Ningbo, Zhejiang, 315000, China

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bladder cancer
DOID/SYMP
  • Bladder carcinoma (DOID:4007 )
    • A urinary bladder cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
    • Derives_from: ['epithelial cells']
    • Has_material_basis_in: ['abnormally proliferating cells derives_from epithelial cells']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP065352.1 See Comparison
NZ_CP065342.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_CP074530.1 See Comparison
NZ_OL988824.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_MH909345.1 See Comparison
NC_025184.1 See Comparison
NZ_CP023187.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_CP030305.1 See Comparison
NC_021501.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_MF042350.1 See Comparison
NZ_CP074530.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_CP065352.1 See Comparison
NZ_CP065342.1 See Comparison
NZ_MF042356.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_OL988824.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_CP030305.1 See Comparison
NC_025184.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP023187.1 See Comparison
NC_021501.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_MF042356.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MF042350.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_CP065352.1 See Comparison
NZ_CP065342.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_OL988824.1 See Comparison
NZ_CP074530.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_MF042356.1 See Comparison
NC_025184.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP030305.1 See Comparison
NC_021501.1 See Comparison
NZ_CP023187.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_MF042350.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_OL988824.1 See Comparison
NZ_CP065352.1 See Comparison
NZ_CP065342.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_CP074530.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP082170.1 See Comparison
NC_025184.1 See Comparison
NZ_CP030305.1 See Comparison
NC_021501.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_CP137480.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP023187.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042350.1 See Comparison
NZ_MF042356.1 See Comparison
NZ_KJ812998.1 See Comparison
NC_025184.1 See Comparison
NZ_CP065352.1 See Comparison
NZ_CP065342.1 See Comparison
NZ_CP074530.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_CP030305.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_OL988824.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP126852.1 See Comparison
NC_021501.1 See Comparison
NZ_CP023187.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_CP065352.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_MF042350.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_MF042356.1 See Comparison
NZ_CP065342.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_CP074530.1 See Comparison
NZ_OL988824.1 See Comparison
NZ_OL828744.1 See Comparison
NC_025184.1 See Comparison
NZ_CP030305.1 See Comparison
NZ_MF042355.1 See Comparison
NC_021501.1 See Comparison
NZ_CP023187.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042356.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_MF042350.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_CP065352.1 See Comparison
NZ_CP065342.1 See Comparison
NZ_MK933278.1 See Comparison
NZ_CP074530.1 See Comparison
NZ_OL988824.1 See Comparison
NZ_OL828744.1 See Comparison
NC_025184.1 See Comparison
NZ_CP030305.1 See Comparison
NZ_CP023187.1 See Comparison
NC_021501.1 See Comparison
NZ_CP126852.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_MF042350.1 See Comparison
NZ_MF042356.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KC887916.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussul1copy
amrfinderplusblecopy
amrfinderplusblaNDM-1copy
rgiBRP(MBL)copy
rgirmtCcopy
amrfinderplusrmtCcopy
PGAGRepB family plasmid replication initiator proteincopy
PGAGIS3-like element ISSen4 family transposasecopy
PGAGGntP family transportercopy
PGAGsite-specific integrasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 134 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_021501_00097MPF_F4834448646plus1001001.07e-62211
mate-pair-formationNC_006323_00096MPF_F4994751338plus98.7071000833
mate-pair-formationNC_006323_00097MPF_F5136351899plus96.0891004.64e-100322
mate-pair-formationNC_009378_00101MPF_T5336955993plus99.7719901784
mate-pair-formationNC_006323_00105MPF_F5639756987plus98.477928.03e-125395
mate-pair-formationNC_021501_00085MPF_F5698757976plus99.6971000640
mate-pair-formationNC_021501_00084MPF_F5804158622plus100933.0400000000000005e-129407
mate-pair-formationNC_021501_00083MPF_F5862260472plus10010001242
mate-pair-formationNC_006323_00113MPF_F6271364059plus97.996980867
mate-pair-formationNC_021501_00076MPF_F6406266845plus1009901798
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2