Plasmid NZ_CP022692.2

Sequence

Nucleotide Information

Accession NZ_CP022692.2
Description Klebsiella pneumoniae subsp. pneumoniae strain AUSMDU00008079 plasmid pAUSMDU00008079_01, complete sequence
Source refseq
Topology circular
Length 207351 bp
GC Content 0.53 %
Created at NCBI Aug. 16, 2017



Assembly

Genome Data Information

Accession GCF_002249975.2
Assembly Coverage 85


Biosample

Curated Collection Information
Accession 7452764

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.81S;144.96E
Original Query Type coordinates
Coordinates (Lat/Lon) -37.81/144.96
Address Argus Centre, 300, La Trobe Street, Melbourne, City of Melbourne, Victoria, 3000, Australia

ECOSYSTEM
Original Query Homo sapiens,Patient urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP080662.1 See Comparison
CP080752.1 See Comparison
CP080731.1 See Comparison
CP080713.1 See Comparison
CP080727.1 See Comparison
CP080717.1 See Comparison
CP080723.1 See Comparison
CP080698.1 See Comparison
CP080739.1 See Comparison
CP080746.1 See Comparison
CP080689.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
CP080653.1 See Comparison
CP080679.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080671.1 See Comparison
NZ_LR130549.1 See Comparison
NZ_CP027054.1 See Comparison
CP080662.1 See Comparison
NZ_CP149488.1 See Comparison
NZ_MT560072.1 See Comparison
NZ_CP098357.1 See Comparison
CP080752.1 See Comparison
CP080731.1 See Comparison
CP080713.1 See Comparison
CP080727.1 See Comparison
CP080717.1 See Comparison
CP080723.1 See Comparison
CP080698.1 See Comparison
CP080739.1 See Comparison
CP080746.1 See Comparison
CP080689.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
CP080653.1 See Comparison
CP080679.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080671.1 See Comparison
NZ_LR130549.1 See Comparison
NZ_CP027054.1 See Comparison
NZ_MT560072.1 See Comparison
NZ_CP149488.1 See Comparison
CP080662.1 See Comparison
NZ_CP098357.1 See Comparison
CP080752.1 See Comparison
CP080731.1 See Comparison
CP080713.1 See Comparison
CP080727.1 See Comparison
CP080717.1 See Comparison
CP080723.1 See Comparison
CP080698.1 See Comparison
CP080739.1 See Comparison
CP080746.1 See Comparison
CP080689.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
CP080653.1 See Comparison
CP080679.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080671.1 See Comparison
NZ_LR130549.1 See Comparison
NZ_CP027054.1 See Comparison
CP080662.1 See Comparison
NZ_MT560072.1 See Comparison
NZ_CP149488.1 See Comparison
NZ_CP098357.1 See Comparison
CP080752.1 See Comparison
CP080731.1 See Comparison
CP080713.1 See Comparison
CP080727.1 See Comparison
CP080717.1 See Comparison
CP080723.1 See Comparison
CP080698.1 See Comparison
CP080739.1 See Comparison
CP080746.1 See Comparison
CP080689.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
CP080653.1 See Comparison
CP080679.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080671.1 See Comparison
NZ_LR130549.1 See Comparison
NZ_CP027054.1 See Comparison
NZ_CP149488.1 See Comparison
CP080662.1 See Comparison
NZ_MT560072.1 See Comparison
NZ_CP098357.1 See Comparison
CP080662.1 See Comparison
CP080752.1 See Comparison
CP080731.1 See Comparison
NZ_LR130549.1 See Comparison
NZ_CP027054.1 See Comparison
NZ_CP149488.1 See Comparison
NZ_MT560072.1 See Comparison
NZ_CP098357.1 See Comparison
CP080713.1 See Comparison
CP080727.1 See Comparison
CP080717.1 See Comparison
CP080723.1 See Comparison
CP080698.1 See Comparison
CP080739.1 See Comparison
CP080746.1 See Comparison
CP080689.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
CP080653.1 See Comparison
CP080679.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080671.1 See Comparison
CP080717.1 See Comparison
CP080723.1 See Comparison
CP080698.1 See Comparison
CP080739.1 See Comparison
CP080746.1 See Comparison
CP080689.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
CP080752.1 See Comparison
CP080731.1 See Comparison
CP080653.1 See Comparison
CP080713.1 See Comparison
CP080679.1 See Comparison
CP080727.1 See Comparison
NZ_LR130549.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080671.1 See Comparison
NZ_CP027054.1 See Comparison
NZ_CP149488.1 See Comparison
NZ_CP022692.2 See Comparison
NZ_CP098357.1 See Comparison
NZ_MT560072.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore