Plasmid NZ_CP027054.1

Sequence

Nucleotide Information

Accession NZ_CP027054.1
Description Klebsiella pneumoniae strain 2_GR_12 plasmid IncFIB IncFII
Source refseq
Topology linear
Length 197872 bp
GC Content 0.53 %
Created at NCBI Dec. 6, 2018



Assembly

Genome Data Information

Accession GCF_001702045.2
Assembly Coverage 67


Biosample

Curated Collection Information
Accession 4868722

PLASMID INFORMATION
Genotype ST258

GEOGRAPHICAL INFORMATION
Original Query 38.03N;23.79E
Original Query Type coordinates
Coordinates (Lat/Lon) 38.03/23.79
Address Υγεία, 4, Ερυθρού Σταυρού, Agia Filothei, Municipality of Marousi, Regional Unit of North Athens, Attica, 151 23, Greece

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP080662.1 See Comparison
CP080731.1 See Comparison
CP080713.1 See Comparison
CP080717.1 See Comparison
CP080698.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080671.1 See Comparison
NZ_LR130549.1 See Comparison
NZ_CP149488.1 See Comparison
NZ_CP022692.2 See Comparison
NZ_LR130549.1 See Comparison
CP080717.1 See Comparison
CP080698.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080671.1 See Comparison
CP080662.1 See Comparison
CP080731.1 See Comparison
CP080713.1 See Comparison
NZ_CP027054.1 See Comparison
CP080662.1 See Comparison
NZ_CP149488.1 See Comparison
NZ_CP022692.2 See Comparison
CP080731.1 See Comparison
CP080675.1 See Comparison
CP080713.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080717.1 See Comparison
CP080671.1 See Comparison
CP080698.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
NZ_CP022692.2 See Comparison
NZ_LR130549.1 See Comparison
NZ_CP149488.1 See Comparison
CP080662.1 See Comparison
CP080731.1 See Comparison
CP080713.1 See Comparison
CP080717.1 See Comparison
CP080698.1 See Comparison
CP080708.1 See Comparison
CP080685.1 See Comparison
CP080694.1 See Comparison
CP080671.1 See Comparison
CP080735.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
NZ_CP022692.2 See Comparison
NZ_LR130549.1 See Comparison
NZ_CP149488.1 See Comparison
NZ_CP149488.1 See Comparison
NZ_LR130549.1 See Comparison
CP080662.1 See Comparison
CP080731.1 See Comparison
CP080713.1 See Comparison
CP080717.1 See Comparison
CP080698.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080671.1 See Comparison
CP080662.1 See Comparison
NZ_CP022692.2 See Comparison
CP080731.1 See Comparison
CP080713.1 See Comparison
CP080717.1 See Comparison
CP080698.1 See Comparison
CP080708.1 See Comparison
CP080694.1 See Comparison
CP080735.1 See Comparison
CP080675.1 See Comparison
CP080658.1 See Comparison
CP080685.1 See Comparison
CP080671.1 See Comparison
NZ_CP022692.2 See Comparison
NZ_LR130549.1 See Comparison
NZ_CP149488.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore