Plasmid CP080746.1
Sequence
Nucleotide Information
| Accession | CP080746.1 |
|---|---|
| Description | Klebsiella pneumoniae strain VA21856_hybrid plasmid pIncFIB(Kpn3), complete sequence |
| Source | insd |
| Topology | circular |
| Length | 206152 bp |
| GC Content | 0.53 % |
| Created at NCBI | Aug. 16, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 19952044 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 51.3406321N;12.3747329E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 51.34/12.37 |
| Address | Leipzig Markt, Markt, center, Mitte, Leipzig, Saxony, 04109, Germany |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | Mrx | copy | ||
| amrfinderplus | pcoS | copy | ||
| amrfinderplus | silB | copy | ||
| amrfinderplus | pcoC | copy | ||
| amrfinderplus | pcoA | copy | ||
| amrfinderplus | pcoB | copy | ||
| amrfinderplus | mph(A) | copy | ||
| amrfinderplus | silA | copy | ||
| amrfinderplus | pcoR | copy | ||
| amrfinderplus | pcoD | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 45 entries
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000107__CP014778_00094 | IncFIB | 1 | 1011 | plus | 90.307 | 100 | 0 | 1325 |
| replicon | CP033468_00001 | rep_cluster_2183 | 137490 | 138317 | minus | 82.289 | 96 | 0 | 715 |
| replicon | 000129__CP018340 | IncFII | 138352 | 138586 | plus | 99.574 | 100 | 7.44e-118 | 429 |
| relaxase | NC_021231_00058 | MOBF | 143633 | 148891 | minus | 97.091 | 100 | 0 | 3333 |
| relaxase | CP035180_00077 | MOBF | 148903 | 149658 | minus | 91.27 | 98 | 0 | 366 |
| mate-pair-formation | NC_021502_00150 | MPF_T | 148894 | 151203 | minus | 97.013 | 100 | 0 | 1419 |
| mate-pair-formation | NC_023905_00125 | MPF_F | 153692 | 156538 | minus | 99.684 | 100 | 0 | 1769 |
| mate-pair-formation | NC_019165_00034 | MPF_F | 156541 | 157908 | minus | 100 | 100 | 0 | 843 |
| mate-pair-formation | NC_021654_00016 | MPF_F | 160708 | 162711 | minus | 100 | 100 | 0 | 1292 |
| mate-pair-formation | NC_019389_00080 | MPF_F | 162711 | 163346 | minus | 96.698 | 100 | 3.2499999999999997e-135 | 424 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |