Plasmid NZ_CP018338.1

Sequence

Nucleotide Information

Accession NZ_CP018338.1
Description Klebsiella pneumoniae isolate Kp_Goe_154414 plasmid pKp_Goe_414-2, complete sequence
Source refseq
Topology circular
Length 202175 bp
GC Content 0.50 %
Created at NCBI Dec. 19, 2016



Assembly

Genome Data Information

Accession GCF_001902335.1
Assembly Coverage 147


Biosample

Curated Collection Information
Accession 5412805

PLASMID INFORMATION
Genotype MLST ST23

GEOGRAPHICAL INFORMATION
Original Query 51.53919016N;9.91156249E
Original Query Type coordinates
Coordinates (Lat/Lon) 51.54/9.91
Address Königsstieg, Egelsberg, Weststadt, Göttingen, Landkreis Göttingen, Lower Saxony, 37081, Germany

ECOSYSTEM
Original Query Homo sapiens,wound swab
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 36
Host-associated Sex male

DISEASE
Original Query wound (hand)
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusterDcopy
amrfinderplusterEcopy
amrfinderplusterBcopy
amrfinderplusterCcopy
amrfinderplussilCcopy
amrfinderplussilAcopy
amrfinderplussilBcopy
amrfinderplussilRcopy
amrfinderplussilScopy
amrfinderpluspeg-344copy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000107__CP014778_00094IncFIB164625165635minus99.60410001845
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2