Plasmid NZ_CP053773.1

Sequence

Nucleotide Information

Accession NZ_CP053773.1
Description Klebsiella pneumoniae strain BP3636 plasmid pIncFIBK, complete sequence
Source refseq
Topology circular
Length 105455 bp
GC Content 0.51 %
Created at NCBI May 26, 2020



Assembly

Genome Data Information

Accession GCF_011742415.2
Assembly Coverage 106


Biosample

Curated Collection Information
Accession 14402341

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9246N;79.1348E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP058800.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP016922.1 See Comparison
NZ_CP006800.1 See Comparison
CP058800.1 See Comparison
CP034407.1 See Comparison
NZ_CP022613.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP028930.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP006800.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_CP016922.1 See Comparison
NZ_CP097234.1 See Comparison
CP034407.1 See Comparison
NZ_CP022613.1 See Comparison
CP058800.1 See Comparison
NZ_CP053773.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP028930.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_CP016922.1 See Comparison
NZ_CP006800.1 See Comparison
CP034407.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP022613.1 See Comparison
NZ_CP028930.1 See Comparison
CP058800.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP078035.1 See Comparison
CP058800.1 See Comparison
NZ_CP006800.1 See Comparison
CP034407.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP022613.1 See Comparison
NZ_CP028930.1 See Comparison
NZ_CP016922.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_CP006800.1 See Comparison
CP034407.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP022613.1 See Comparison
CP058800.1 See Comparison
NZ_CP016922.1 See Comparison
NZ_CP028930.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP022613.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_CP016922.1 See Comparison
NZ_CP006800.1 See Comparison
CP034407.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP028930.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore