Plasmid NZ_CP085071.1

Sequence

Nucleotide Information

Accession NZ_CP085071.1
Description Escherichia coli strain P27_L1_05.20 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 48551 bp
GC Content 0.50 %
Created at NCBI Oct. 25, 2021



Assembly

Genome Data Information

Accession GCF_020541005.1
Assembly Coverage 412


Biosample

Curated Collection Information
Accession 22251400

PLASMID INFORMATION
Genotype ST8346

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query Homo sapiens,pure culture,rectal swab
Classification cell_culture,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP021533.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP075060.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_CP015838.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_CP146584.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_CP075060.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP015838.1 See Comparison
NZ_CP146584.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_CP075060.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP146584.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP015838.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_CP075060.1 See Comparison
NZ_CP085071.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP015838.1 See Comparison
NZ_CP146584.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_CP015838.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP075060.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP146584.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_CP015838.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP075060.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP146584.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_CP075060.1 See Comparison
NZ_AP019806.1 See Comparison
NZ_CP082123.1 See Comparison
NZ_KY463221.1 See Comparison
NZ_CP021533.1 See Comparison
NZ_CP076304.1 See Comparison
NZ_CP023957.1 See Comparison
NZ_CP146584.1 See Comparison
NZ_CP015838.1 See Comparison
NZ_CP142946.1 See Comparison
NZ_CP142922.1 See Comparison
NZ_KY463221.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCMY-42copy
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGProQ/FINO family proteincopy
PGAGyagAcopy
PGAGhypothetical proteincopy
PGAGParA family plasmid-partitioning AAA ATPasecopy
PGAGY-family DNA polymerasecopy
PGAGumuDcopy
PGAGDinI-like family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 58 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconKC788405IncI-gamma/K1461077plus10010001906
relaxaseNC_019097MOBP2966132354plus94.3219901668
oriTJN253636MOBP2919929291minus1001004.37e-41172
mate-pair-formationNC_019097_00056MPF_I3243134689minus98.8059201444
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2