Plasmid NZ_CP037741.1

Sequence

Nucleotide Information

Accession NZ_CP037741.1
Description Citrobacter freundii strain CAV1857 plasmid pCAV1857-1916, complete sequence
Source refseq
Topology circular
Length 1916 bp
GC Content 0.52 %
Created at NCBI March 16, 2019



Assembly

Genome Data Information

Accession GCF_004344985.1
Assembly Coverage 118


Biosample

Curated Collection Information
Accession 11055879

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Charlottesville
Original Query Type name
Coordinates (Lat/Lon) 38.03/-78.48
Address USA,Charlottesville

ECOSYSTEM
Original Query cell culture,hospital sink
Classification anthropogenic,cell_culture,construction,hospital
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OW968006.1 See Comparison
OW968153.1 See Comparison
OW968006.1 See Comparison
OW849076.1 See Comparison
OW849044.1 See Comparison
OW849029.1 See Comparison
OW849022.1 See Comparison
OW848994.1 See Comparison
NZ_CP074192.1 See Comparison
NZ_CP011651.1 See Comparison
NZ_CP011603.1 See Comparison
NZ_CP030349.1 See Comparison
OW848963.1 See Comparison
OW848952.1 See Comparison
OW848945.1 See Comparison
OW848938.1 See Comparison
OW848927.1 See Comparison
OW848913.1 See Comparison
OW968153.1 See Comparison
OW848952.1 See Comparison
OW848945.1 See Comparison
OW848938.1 See Comparison
OW848927.1 See Comparison
OW848913.1 See Comparison
NZ_CP074192.1 See Comparison
OW849076.1 See Comparison
OW849044.1 See Comparison
OW849029.1 See Comparison
OW849022.1 See Comparison
OW848994.1 See Comparison
OW848963.1 See Comparison
NZ_CP030349.1 See Comparison
NZ_CP011651.1 See Comparison
NZ_CP011603.1 See Comparison
OW849076.1 See Comparison
OW968153.1 See Comparison
OW848963.1 See Comparison
OW848952.1 See Comparison
OW968006.1 See Comparison
OW848945.1 See Comparison
OW848938.1 See Comparison
OW848927.1 See Comparison
OW848913.1 See Comparison
OW849044.1 See Comparison
OW849029.1 See Comparison
OW849022.1 See Comparison
OW848994.1 See Comparison
NZ_CP011651.1 See Comparison
NZ_CP074192.1 See Comparison
NZ_CP011603.1 See Comparison
OW848927.1 See Comparison
NZ_CP030349.1 See Comparison
OW968006.1 See Comparison
OW968153.1 See Comparison
OW848913.1 See Comparison
OW849076.1 See Comparison
OW848963.1 See Comparison
OW848952.1 See Comparison
OW848945.1 See Comparison
OW848938.1 See Comparison
OW849044.1 See Comparison
OW849029.1 See Comparison
OW849022.1 See Comparison
OW848994.1 See Comparison
NZ_CP030349.1 See Comparison
NZ_CP011651.1 See Comparison
NZ_CP011603.1 See Comparison
NZ_CP074192.1 See Comparison
OW968006.1 See Comparison
OW968153.1 See Comparison
OW848963.1 See Comparison
OW848913.1 See Comparison
OW848952.1 See Comparison
OW848945.1 See Comparison
OW848938.1 See Comparison
OW848927.1 See Comparison
OW849044.1 See Comparison
OW849029.1 See Comparison
OW849022.1 See Comparison
OW848994.1 See Comparison
NZ_CP030349.1 See Comparison
NZ_CP011651.1 See Comparison
NZ_CP011603.1 See Comparison
NZ_CP037741.1 See Comparison
OW849076.1 See Comparison
NZ_CP074192.1 See Comparison
OW848963.1 See Comparison
OW968153.1 See Comparison
OW968006.1 See Comparison
OW848952.1 See Comparison
OW848945.1 See Comparison
OW848938.1 See Comparison
OW848927.1 See Comparison
OW848913.1 See Comparison
NZ_CP074192.1 See Comparison
OW849076.1 See Comparison
OW849044.1 See Comparison
OW849029.1 See Comparison
OW849022.1 See Comparison
OW848994.1 See Comparison
NZ_CP011651.1 See Comparison
NZ_CP011603.1 See Comparison
NZ_CP030349.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore