Plasmid NZ_CP010363.1

Sequence

Nucleotide Information

Accession NZ_CP010363.1
Description Enterobacter hormaechei subsp. xiangfangensis strain 34978 plasmid p34978-139.941kb, complete sequence
Source refseq
Topology circular
Length 139941 bp
GC Content 0.54 %
Created at NCBI March 4, 2015



Assembly

Genome Data Information

Accession GCF_000807405.2
Assembly Coverage 7.78


Biosample

Curated Collection Information
Accession 3067415

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,Biliary fluid,bodily fluid
Classification host_associated,liver
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaTEM-1copy
amrfinderplusblaOXA-9copy
rgiaadAcopy
rgiAAC(6')-Ib9copy
amrfinderplusncrYcopy
amrfinderplusncrCcopy
amrfinderplusncrBcopy
amrfinderplusncrAcopy
amrfinderplussul2copy
amrfinderplusblaKPC-3copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 181 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_021502_00150MPF_T31022plus96.765994.29e-169548
mate-pair-formationNC_014312_00116MPF_F115021115323plus1001004.22e-61207
mate-pair-formationNC_014312_00118MPF_F115899116636plus99.5931001.2499999999999998e-159496
mate-pair-formationNC_023332_00154MPF_F116639118060plus99.5781000791
mate-pair-formationNC_019389_00068MPF_F118243118758plus98.837892.02e-109350
mate-pair-formationNC_021502_00131MPF_T121320123956plus96.81510001758
mate-pair-formationNC_014312_00128MPF_F124348124980plus99.5261004.01e-126399
mate-pair-formationNC_022609_00081MPF_F125416126402plus95.1521000652
mate-pair-formationNC_019389_00080MPF_F126418127053plus99.0571008.54e-139435
mate-pair-formationNC_021654_00016MPF_F127106129067plus98.4719801240
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2