Plasmid NZ_CP025039.1

Sequence

Nucleotide Information

Accession NZ_CP025039.1
Description Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_2, complete sequence
Source refseq
Topology circular
Length 146689 bp
GC Content 0.54 %
Created at NCBI Dec. 8, 2017



Assembly

Genome Data Information

Accession GCF_002812665.1
Assembly Coverage 90


Biosample

Curated Collection Information
Accession 8111037

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 41.8945N;87.6208W
Original Query Type coordinates
Coordinates (Lat/Lon) 41.89/-87.62
Address Feinberg Pavilion, 251, East Huron Street, Magnificent Mile, Near North Side, Chicago, Cook County, Illinois, 60611, United States

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Cystitis
DOID/SYMP
  • Cystitis (DOID:1679 )
    • A bladder disease that is characterized by inflammation of the bladder.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusncrAcopy
amrfinderplusncrCcopy
amrfinderplusncrBcopy
amrfinderplusncrYcopy
amrfinderplusaph(6)-Idcopy
amrfinderplussul2copy
amrfinderplusblaKPC-3copy
amrfinderplusblaTEM-1copy
amrfinderplusdfrA14copy
amrfinderplusaadA1copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 186 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconAF250878IncFIA5795358340plus94.5881002.5900000000000002e-169601
repliconKF954760IncFII123262123488plus1001004.3e-115420
mate-pair-formationNC_014312_00116MPF_F8696587267plus1001004.22e-61207
relaxaseCP035180_00077MOBF112143112898plus94.048980381
relaxaseNC_021231_00058MOBF112910118168plus98.34610003376
mate-pair-formationNC_014312_00118MPF_F8784388580plus99.5931001.2499999999999998e-159496
mate-pair-formationNC_023332_00154MPF_F8858390004plus99.5781000791
mate-pair-formationNC_019389_00068MPF_F9018790702plus98.837892.02e-109350
mate-pair-formationNC_021502_00131MPF_T9326495900plus96.81510001758
mate-pair-formationNC_014312_00128MPF_F9629296924plus99.5261004.01e-126399
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2