Plasmid NZ_CP010367.1

Sequence

Nucleotide Information

Accession NZ_CP010367.1
Description Enterobacter hormaechei subsp. xiangfangensis strain 34978 plasmid p34978-5.413kb, complete sequence
Source refseq
Topology circular
Length 5413 bp
GC Content 0.53 %
Created at NCBI March 4, 2015



Assembly

Genome Data Information

Accession GCF_000807405.2
Assembly Coverage 7.78


Biosample

Curated Collection Information
Accession 3067415

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,Biliary fluid,bodily fluid
Classification host_associated,liver
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGMobC family plasmid mobilization relaxosome proteincopy
PGAGtype II toxin-antitoxin system RelE/ParE family toxincopy
PGAGHigA family addiction module antitoxincopy
PGAGhypothetical proteincopy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
MOB-typerrep_cluster_2335copy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_021293_00005MOBP31103minus96.185890717
repliconKU302809_00001rep_cluster_233516262214plus91.709970813
oriTCP008720MOBP15291703minus98.8571005.54e-83313
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2