Plasmid NZ_CP002149.1
Sequence
Nucleotide Information
| Accession | NZ_CP002149.1 |
|---|---|
| Description | Staphylococcus aureus strain LAC plasmid pLAC-P03, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 27068 bp |
| GC Content | 0.31 % |
| Created at NCBI | June 3, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Staphylococcus aureus (1280) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Bacillota (1239) |
| Class | Bacilli (91061) |
| Order | Bacillales (1385) |
| Family | Staphylococcaceae (90964) |
| Genus | Staphylococcus (1279) |
| Species | Staphylococcus_aureus (1280) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14224446 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | None |
|---|---|
| Original Query Type | None |
| Coordinates (Lat/Lon) | |
| Address | None |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NC_018961.1
- Description: Staphylococcus aureus plasmid p18809-P03, complete sequence
- Source: refseq
- Created at NCBI: Nov. 3, 2012
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 14224392 - GEOGRAPHICAL INFORMATION
- Original Query: None
- Original Query Type: None
- Address: None
- Coordinates (Lat/Lon):
- ECOSYSTEM
- Original Query: None
- Classification: None
- Host-associated Taxon:
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | aad(6) | copy | ||
| amrfinderplus | blaR1 | copy | ||
| amrfinderplus | blaZ | copy | ||
| amrfinderplus | cadD | copy | ||
| rgi | msrA | copy | ||
| rgi | mphC | copy | ||
| rgi | SAT-4 | copy | ||
| rgi | PC1 beta-lactamase (blaZ) | copy | ||
| amrfinderplus | sat4 | copy | ||
| amrfinderplus | msr(A) | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 36 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | AP003139 | rep_cluster_2100 | 1 | 984 | plus | 99.593 | 100 | 0 | 1796 |
| replicon | 000261__GQ900456 | rep_cluster_1017 | 1115 | 1285 | plus | 93.605 | 91 | 1.04e-65 | 255 |
| replicon | CP000737 | rep_cluster_1733 | 25900 | 26643 | minus | 100 | 100 | 0 | 1375 |
| oriT | AF001314 | MOBQ | 1349 | 1497 | plus | 100 | 100 | 5.980000000000001e-72 | 276 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |