Plasmid NZ_CP018767.1

Sequence

Nucleotide Information

Accession NZ_CP018767.1
Description Staphylococcus aureus strain UCI62 plasmid pUCI62, complete sequence
Source refseq
Topology circular
Length 26856 bp
GC Content 0.31 %
Created at NCBI Feb. 3, 2017



Assembly

Genome Data Information

Accession GCF_001975005.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 6046111

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,California
Original Query Type name
Coordinates (Lat/Lon) 36.70/-118.76
Address USA,California

ECOSYSTEM
Original Query Homo sapiens,UNK,Human_no contact with swine
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP103861.1 See Comparison
NZ_CP104021.1 See Comparison
NZ_CP062321.1 See Comparison
NZ_CP062367.1 See Comparison
CP083745.1 See Comparison
NZ_CP007177.1 See Comparison
NC_018961.1 See Comparison
NZ_CP014443.1 See Comparison
NZ_CP014440.1 See Comparison
NZ_CP014428.1 See Comparison
NZ_CP014425.1 See Comparison
NZ_CP014411.1 See Comparison
NC_018957.1 See Comparison
NC_013294.1 See Comparison
NZ_CP014434.1 See Comparison
NZ_CP009425.1 See Comparison
NZ_CP014431.1 See Comparison
NZ_CP014414.1 See Comparison
NC_013289.1 See Comparison
CP030633.1 See Comparison
NZ_CP014437.1 See Comparison
NZ_CP014422.1 See Comparison
CP030667.1 See Comparison
CP030672.1 See Comparison
CP030597.1 See Comparison
NZ_CP031889.1 See Comparison
CP030416.1 See Comparison
CP030446.1 See Comparison
NZ_CP031891.1 See Comparison
NZ_CP014364.1 See Comparison
NZ_CP014370.1 See Comparison
NZ_CP014383.1 See Comparison
NZ_CP014367.1 See Comparison
CP154283.1 See Comparison
CP156704.1 See Comparison
CP155821.1 See Comparison
CP152317.1 See Comparison
CP152320.1 See Comparison
NZ_CP029677.1 See Comparison
NZ_CP016862.1 See Comparison
NZ_CP152122.1 See Comparison
NZ_CP147692.1 See Comparison
NZ_CP147695.1 See Comparison
NZ_CP151124.1 See Comparison
CP150101.1 See Comparison
CP150112.1 See Comparison
NZ_CP062321.1 See Comparison
NZ_CP002149.1 See Comparison
NZ_CP103861.1 See Comparison
NZ_CP104021.1 See Comparison
NZ_CP062367.1 See Comparison
NZ_CP014431.1 See Comparison
CP083745.1 See Comparison
NZ_CP014428.1 See Comparison
NZ_CP014425.1 See Comparison
NZ_CP014411.1 See Comparison
NZ_CP014414.1 See Comparison
NZ_CP014437.1 See Comparison
NZ_CP014434.1 See Comparison
NZ_CP014422.1 See Comparison
NZ_CP014443.1 See Comparison
NZ_CP014440.1 See Comparison
NZ_CP007177.1 See Comparison
NZ_CP009425.1 See Comparison
CP030667.1 See Comparison
NC_018961.1 See Comparison
NC_018957.1 See Comparison
NC_013294.1 See Comparison
NC_013289.1 See Comparison
CP030672.1 See Comparison
CP030597.1 See Comparison
CP030633.1 See Comparison
NZ_CP031889.1 See Comparison
CP030416.1 See Comparison
NZ_CP031891.1 See Comparison
NZ_CP014370.1 See Comparison
CP030446.1 See Comparison
NZ_CP014383.1 See Comparison
NZ_CP014367.1 See Comparison
CP154283.1 See Comparison
CP156704.1 See Comparison
CP155821.1 See Comparison
CP152317.1 See Comparison
NZ_CP014364.1 See Comparison
NZ_CP029677.1 See Comparison
NZ_CP016862.1 See Comparison
NZ_CP152122.1 See Comparison
NZ_CP151124.1 See Comparison
CP152320.1 See Comparison
NZ_CP147692.1 See Comparison
NZ_CP147695.1 See Comparison
CP150101.1 See Comparison
CP150112.1 See Comparison
NZ_CP103861.1 See Comparison
NZ_CP002149.1 See Comparison
NZ_CP104021.1 See Comparison
NC_018961.1 See Comparison
CP083745.1 See Comparison
NZ_CP014431.1 See Comparison
NZ_CP014414.1 See Comparison
NZ_CP014437.1 See Comparison
NZ_CP014422.1 See Comparison
NZ_CP014443.1 See Comparison
NZ_CP014440.1 See Comparison
NZ_CP014428.1 See Comparison
NZ_CP007177.1 See Comparison
NZ_CP062321.1 See Comparison
NZ_CP062367.1 See Comparison
NZ_CP014425.1 See Comparison
NZ_CP014411.1 See Comparison
NZ_CP014434.1 See Comparison
NZ_CP009425.1 See Comparison
NC_018957.1 See Comparison
NC_013294.1 See Comparison
NC_013289.1 See Comparison
CP030633.1 See Comparison
CP030672.1 See Comparison
CP030597.1 See Comparison
CP030667.1 See Comparison
CP030416.1 See Comparison
CP030446.1 See Comparison
NZ_CP014364.1 See Comparison
NZ_CP031889.1 See Comparison
NZ_CP031891.1 See Comparison
NZ_CP014383.1 See Comparison
NZ_CP014367.1 See Comparison
NZ_CP014370.1 See Comparison
NZ_CP029677.1 See Comparison
NZ_CP016862.1 See Comparison
NZ_CP147695.1 See Comparison
CP156704.1 See Comparison
CP155821.1 See Comparison
NZ_CP152122.1 See Comparison
CP152317.1 See Comparison
CP152320.1 See Comparison
CP154283.1 See Comparison
NZ_CP151124.1 See Comparison
NZ_CP147692.1 See Comparison
NC_018957.1 See Comparison
CP150101.1 See Comparison
CP150112.1 See Comparison
NZ_CP103861.1 See Comparison
NZ_CP062321.1 See Comparison
NZ_CP062367.1 See Comparison
NZ_CP014431.1 See Comparison
NZ_CP014414.1 See Comparison
NZ_CP014437.1 See Comparison
NZ_CP014422.1 See Comparison
NZ_CP014443.1 See Comparison
NZ_CP014440.1 See Comparison
NZ_CP014428.1 See Comparison
NZ_CP014425.1 See Comparison
NZ_CP007177.1 See Comparison
NZ_CP002149.1 See Comparison
NZ_CP104021.1 See Comparison
CP083745.1 See Comparison
NZ_CP014411.1 See Comparison
NZ_CP014434.1 See Comparison
NZ_CP009425.1 See Comparison
NC_013294.1 See Comparison
NC_018961.1 See Comparison
NC_013289.1 See Comparison
CP030633.1 See Comparison
CP030672.1 See Comparison
CP030597.1 See Comparison
CP030667.1 See Comparison
CP030416.1 See Comparison
NZ_CP031889.1 See Comparison
NZ_CP031891.1 See Comparison
CP030446.1 See Comparison
NZ_CP014364.1 See Comparison
NZ_CP014383.1 See Comparison
NZ_CP014367.1 See Comparison
NZ_CP014370.1 See Comparison
NZ_CP029677.1 See Comparison
NZ_CP016862.1 See Comparison
CP154283.1 See Comparison
CP156704.1 See Comparison
CP155821.1 See Comparison
NZ_CP152122.1 See Comparison
CP152317.1 See Comparison
CP152320.1 See Comparison
NZ_CP147695.1 See Comparison
NZ_CP151124.1 See Comparison
NZ_CP147692.1 See Comparison
CP030597.1 See Comparison
CP150101.1 See Comparison
CP150112.1 See Comparison
NZ_CP002149.1 See Comparison
NZ_CP062321.1 See Comparison
NZ_CP062367.1 See Comparison
NZ_CP014411.1 See Comparison
NZ_CP014434.1 See Comparison
NZ_CP018767.1 See Comparison
NZ_CP009425.1 See Comparison
CP030633.1 See Comparison
NZ_CP103861.1 See Comparison
NZ_CP104021.1 See Comparison
CP083745.1 See Comparison
NZ_CP014431.1 See Comparison
NZ_CP014414.1 See Comparison
NZ_CP014437.1 See Comparison
NZ_CP014422.1 See Comparison
NZ_CP014443.1 See Comparison
NZ_CP014440.1 See Comparison
NZ_CP014428.1 See Comparison
NZ_CP014425.1 See Comparison
NZ_CP007177.1 See Comparison
NC_018961.1 See Comparison
NC_018957.1 See Comparison
NC_013294.1 See Comparison
NC_013289.1 See Comparison
NZ_CP014364.1 See Comparison
CP030446.1 See Comparison
CP030416.1 See Comparison
CP030667.1 See Comparison
CP030672.1 See Comparison
NZ_CP031889.1 See Comparison
NZ_CP031891.1 See Comparison
NZ_CP014370.1 See Comparison
NZ_CP014383.1 See Comparison
NZ_CP014367.1 See Comparison
NZ_CP029677.1 See Comparison
NZ_CP016862.1 See Comparison
NZ_CP152122.1 See Comparison
CP156704.1 See Comparison
NZ_CP002149.1 See Comparison
CP155821.1 See Comparison
CP152317.1 See Comparison
CP152320.1 See Comparison
NZ_CP151124.1 See Comparison
CP150101.1 See Comparison
CP150112.1 See Comparison
CP154283.1 See Comparison
NZ_CP147695.1 See Comparison
NZ_CP147692.1 See Comparison
NZ_CP062321.1 See Comparison
NZ_CP103861.1 See Comparison
NZ_CP104021.1 See Comparison
NZ_CP062367.1 See Comparison
NZ_CP014431.1 See Comparison
CP083745.1 See Comparison
NZ_CP014414.1 See Comparison
NZ_CP014437.1 See Comparison
NZ_CP014422.1 See Comparison
NZ_CP014443.1 See Comparison
NZ_CP014440.1 See Comparison
NZ_CP014428.1 See Comparison
NZ_CP014425.1 See Comparison
NC_013294.1 See Comparison
NZ_CP014411.1 See Comparison
NZ_CP014434.1 See Comparison
NZ_CP009425.1 See Comparison
NZ_CP007177.1 See Comparison
NC_018961.1 See Comparison
NC_018957.1 See Comparison
NC_013289.1 See Comparison
CP030446.1 See Comparison
CP030633.1 See Comparison
CP030667.1 See Comparison
CP030672.1 See Comparison
CP030597.1 See Comparison
CP030416.1 See Comparison
NZ_CP031889.1 See Comparison
CP154283.1 See Comparison
NZ_CP031891.1 See Comparison
NZ_CP014364.1 See Comparison
NZ_CP014370.1 See Comparison
NZ_CP014383.1 See Comparison
NZ_CP014367.1 See Comparison
NZ_CP029677.1 See Comparison
NZ_CP016862.1 See Comparison
CP156704.1 See Comparison
CP155821.1 See Comparison
CP152317.1 See Comparison
CP152320.1 See Comparison
NZ_CP152122.1 See Comparison
NZ_CP147692.1 See Comparison
NZ_CP151124.1 See Comparison
NZ_CP062367.1 See Comparison
CP150101.1 See Comparison
CP150112.1 See Comparison
NZ_CP103861.1 See Comparison
NZ_CP104021.1 See Comparison
NZ_CP147695.1 See Comparison
NZ_CP002149.1 See Comparison
CP083745.1 See Comparison
NZ_CP062321.1 See Comparison
NZ_CP014437.1 See Comparison
NZ_CP014422.1 See Comparison
NZ_CP014443.1 See Comparison
NZ_CP014440.1 See Comparison
NZ_CP014428.1 See Comparison
NZ_CP014425.1 See Comparison
NZ_CP014411.1 See Comparison
NZ_CP014434.1 See Comparison
NZ_CP009425.1 See Comparison
NZ_CP014431.1 See Comparison
NZ_CP014414.1 See Comparison
CP156704.1 See Comparison
NZ_CP007177.1 See Comparison
NC_013294.1 See Comparison
NC_013289.1 See Comparison
CP030633.1 See Comparison
CP030667.1 See Comparison
CP030672.1 See Comparison
CP030597.1 See Comparison
NZ_CP031889.1 See Comparison
NZ_CP031891.1 See Comparison
NZ_CP014364.1 See Comparison
NZ_CP014370.1 See Comparison
NZ_CP014383.1 See Comparison
NZ_CP014367.1 See Comparison
NC_018961.1 See Comparison
NC_018957.1 See Comparison
CP030446.1 See Comparison
CP030416.1 See Comparison
NZ_CP029677.1 See Comparison
NZ_CP016862.1 See Comparison
CP155821.1 See Comparison
CP152317.1 See Comparison
NZ_CP152122.1 See Comparison
CP154283.1 See Comparison
CP152320.1 See Comparison
NZ_CP151124.1 See Comparison
CP150101.1 See Comparison
NZ_CP147692.1 See Comparison
NZ_CP147695.1 See Comparison
CP150112.1 See Comparison
NZ_CP002149.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2